| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3348 |
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| Symbol | |
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| ID | 1046992 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 3784803 |
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| End bp | 3785948 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637146766 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | NP_745488 |
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| Protein GI | 26990063 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGACC TTGATCCTCA TGATGAAATA GCGCATTACG TACGGACGGA TCGGCTCGAA
CAGCTGTTCG TCCAGTCAGC GCCTGCGGTG CTTGGCAGCT TCCTGGCCGC CGTCATGCTG
TGCTGGTTGG GCTGGGAGCG TTTCGACCCG CAAAGGGTCA TGGTCTGGAT GACGTTATTG
GGCGTGTCGA CCGGCGTGCG TACCGCCATG TTCTTCGCCT ATCTGCGAGC ACCCGCCAAC
CAGCGCACGG CCGAACGCTG GGAGTGGCGT TACTGGGTCA CGCTGATGCT GTCGGCGGCT
ATCTGGGGCT GGGGCGCCTT TGCCGTAATG CCCGCAGACG ACGCGCTGGG GCAGACGCTG
ATCATGCTGT TTGCCGTCGG CATGTCTGTC AGCGCGGTGT CATGCTACTC CTCCTACCGC
AACATGACCC TGGTGTCGAT GGGCCTGGTC TTGCTGCCTT CTACGGGCTG GCTACTGTTG
CAACCTTCCA CGCTGCAACA AGGGATAGCC TTGGCGGTGC TGGTGTTCGC CTGGTTTGTG
GTCAGCGCGA CGCAAAGCCT GTCCTCGGCA TTGACGACGG CCTGGCGCCT GAAACACGAA
ATGCAACGCG CGCATCGGCT GGCCATGGTG GCCTCGTGCA CGGACGAACT GACCGGCCTG
AACAACCGAC GTGCTTTTTT CGACAATGCT TCGGCGCAGC ACGTCCGGTG CAGGGATGCG
GGTACATTCA TGGCCGTGTT GATGCTGGAC GTCGACCATT TCAAACAGAT CAACGACACG
TTCGGGCATG CCGCAGGCGA CCAGGTGCTG CAGCGCATCG GTGCAGCGAT CAGTGCCAGC
CTGCGTGACA ACGACATTGC CGGCAGGCTG GGCGGCGAGG AGTTCGCCAT CCTGCTGCCC
AATACGCCGC CAGACACGGC GATTGAGGTT GCCGAGCGCC TGCGGGCCCT GATAGCCAAA
CTGCGTGTGA ATGATGAACA CCCGGTCACC GCAAGCATAG GTTTAGCGTT CGCGAAGGCC
CCTGCCACTG AGCTCGGCGC CTTGCTCAGC AGTGCAGACA GCGCCATGTA CCTTTCCAAG
GTATCGGGCC GTAACCGGGT CACGGTCGCC GAACCGGAGC AGGAGGCATT GCGCAAGCAG
CACTAG
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| Protein sequence | MTDLDPHDEI AHYVRTDRLE QLFVQSAPAV LGSFLAAVML CWLGWERFDP QRVMVWMTLL
GVSTGVRTAM FFAYLRAPAN QRTAERWEWR YWVTLMLSAA IWGWGAFAVM PADDALGQTL
IMLFAVGMSV SAVSCYSSYR NMTLVSMGLV LLPSTGWLLL QPSTLQQGIA LAVLVFAWFV
VSATQSLSSA LTTAWRLKHE MQRAHRLAMV ASCTDELTGL NNRRAFFDNA SAQHVRCRDA
GTFMAVLMLD VDHFKQINDT FGHAAGDQVL QRIGAAISAS LRDNDIAGRL GGEEFAILLP
NTPPDTAIEV AERLRALIAK LRVNDEHPVT ASIGLAFAKA PATELGALLS SADSAMYLSK
VSGRNRVTVA EPEQEALRKQ H
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