Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_3223 |
Symbol | |
ID | 1046869 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 3658243 |
End bp | 3659862 |
Gene Length | 1620 bp |
Protein Length | 539 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637146644 |
Product | ABC transporter, periplasmic binding protein |
Protein accession | NP_745366 |
Protein GI | 26989941 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.680403 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCCCAC TGCACCAACT GCTCGCGATC GGCACCCTGG CCCTGGGCCT CACCGCTTGC TCGCCGGCCG ACAACACCTC AACCAGCAAG ACCCTCAACA TCGCCTTCTG GGGTGACAAC ACCACGCTGG TCAGCGTCGA CCCCTTTCAG GTCTACTGGC TCGAACACCG CGTGCTGCTG CGCAACGTCG TCGAGTCGCT CACTGACCAA GACCCGCAGA CCGGTCGCAT CATCCCGTGG CTGGCGAAAA CCTGGGAGGT CGGTGCCGAT GCCCTGAGCT ATACCTTCCA CCTGCGCGAG GACGTCACCT TCAGCAACGG CGAACGCTTC GATGCTCACG CCGTGAAAAC TGCCTTCGAC AGCAACAAAG CGTTCGCCAG CCAGTTGCCG GCCACCTTCG GTGCCACCTA CCTGGCCGGC TACGACCACG CCGAGGTGAT CGACGACTTC ACCGTGCGCC TGGTCCTGGC AAAACCCAAC GCGGGTTTCC TTCAGGCCAC GTCCACCACC AACCTGGCCA TTCTCGCCCC GGCCTCGTAC CGGTTGAGCG CGCAGCAACG CTCGCTGGGC AAGATCATCG GTACCGGGCC ATTCACCCTC GATCACTACA CCCCGGAGGT CGGCGCACGC CTGCTCAAGC GTGCCGATTA CGCCTGGCCC TCGGCCAATG TGCGCAACCA GGGCGCGGCG TACCTGGATG CCGTGGACAT CAGCTACATC CCCGAAGAGA GTGTGCGCAA CGGCCTGTTC CTGCAAGGCA AGGTCGACAT CCTGTGGCCA CGCAACCCGT TCTCGGAAGT TGACCTGCAG CTGTTTCAGT CCAAGGGCGC GACCATCCAG AGCCGTTCGC TGCCAGGCCC GGCGATGAAC CTCTACCCCA ATACCCGCAA CGACCGCCTG CTCGGTGACC GCCAAGTGCG CCTGGCGCTG CAGAAGGCCA TCGACCGCAC CAGCTACGCG CACACCGTCT ACAACACTGC GTTCCCGGTG GTGAGTGGCG TATACGACGT CACCACACCG TTCTTCAAAG CCCAAACCGA CAAGCTCGCC TACGACCCCA AAGGTGCCGA GCAACTGCTC GACGCCGCTG GCTGGCACAA AGGCGACGAC GGCTACCGGC ACAAGAACGG CCAGCGCCTG ACGCTGCGCT ACAACCTCAC ACCCGCCGAA AGCGCCGGTG ACGTGCTGGT ACAGGACCAA CTGCGCAAAG TGGGCATCGA CCTCAAACTG AACGTACTGA CCCGCGCCGA ATGGGTGACC GGCAATTCGA CAGGCGCCTA CGACCTCACC TCCACCTACA TGACCCGCGC CGACCCGATC ATCCTGCAGA CCATCCTCGA CCCGCGCGCC GCCAACAGCG CCACGCTCGC CACCAACACC TACGAGCCCG ACACCCTGGC CAAAGCTCAG GCGCTGTTCG ACAGCGGTAT CACCGCCACT GCCGACACGC AACGGGCCCA GGCCTACGGC CAACTGCAGG ACCTGCTGGT CGACGAAGCG TCGGCGTTCC CGCTGTACGA GCGCGTCTGG CAGGCCGCCA CCGCGCCGCG GGTCAAGCAC TTCCACTGGA CCGCCGAAGG CTTCGCCCTG CTCAGTGACA TCCAGGTCGG CCAGCCATGA
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Protein sequence | MPPLHQLLAI GTLALGLTAC SPADNTSTSK TLNIAFWGDN TTLVSVDPFQ VYWLEHRVLL RNVVESLTDQ DPQTGRIIPW LAKTWEVGAD ALSYTFHLRE DVTFSNGERF DAHAVKTAFD SNKAFASQLP ATFGATYLAG YDHAEVIDDF TVRLVLAKPN AGFLQATSTT NLAILAPASY RLSAQQRSLG KIIGTGPFTL DHYTPEVGAR LLKRADYAWP SANVRNQGAA YLDAVDISYI PEESVRNGLF LQGKVDILWP RNPFSEVDLQ LFQSKGATIQ SRSLPGPAMN LYPNTRNDRL LGDRQVRLAL QKAIDRTSYA HTVYNTAFPV VSGVYDVTTP FFKAQTDKLA YDPKGAEQLL DAAGWHKGDD GYRHKNGQRL TLRYNLTPAE SAGDVLVQDQ LRKVGIDLKL NVLTRAEWVT GNSTGAYDLT STYMTRADPI ILQTILDPRA ANSATLATNT YEPDTLAKAQ ALFDSGITAT ADTQRAQAYG QLQDLLVDEA SAFPLYERVW QAATAPRVKH FHWTAEGFAL LSDIQVGQP
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