| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3144 |
|---|
| Symbol | sda-3 |
|---|
| ID | 1046791 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 3560243 |
|---|
| End bp | 3561619 |
|---|
| Gene Length | 1377 bp |
|---|
| Protein Length | 458 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637146566 |
|---|
| Product | L-serine dehydratase, iron-sulfur-dependent, single chain form |
|---|
| Protein accession | NP_745288 |
|---|
| Protein GI | 26989863 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1760] L-serine deaminase |
|---|
| TIGRFAM ID | [TIGR00720] L-serine dehydratase, iron-sulfur-dependent, single chain form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTATCA GTGTTTTCGA CCTTTTCAAA ATTGGCATCG GGCCGTCCAG TTCCCATACC
GTCGGCCCGA TGCGCGCGGC GGCCACCTTT GCCCAGGCTT TGCGTGAGCA GGGGCTGCTG
GCCCAGGTAA CGCGCGTGCA AGTGCGGCTG TATGGCTCGC TGTCGGCCAC TGGGGTTGGC
CATGCCACCG ACCGCGCGTG CCTGCTAGGC TTGATGGGCC AGTGGCCGGA CTGTATCGAC
CCGTCCACGA TCGAATCGCG CATCGGCCAG GTCCTGCAAG AGCACTGCCT GATGCTCGAC
GGCAGCCATC CGCTGGCCTT CGACTACGGC CGTGACATGC TGCTGCTCGA CGAGAGCCTG
CCTTATCACC CCAATGCCAT GAGCCTGGAA GCCATGGACG GGCAGCGCAG CCTGTTGAGC
CAGACCTATT TTTCGGTGGG CGGCGGCTTC ATCGTCGAGC AAGCCGAGAT CGATGCGCCG
GCAAGCGAAA TGAATGCCGT GATGCTGCCT TATGAGTTCG ACAGTGGTGC GCAACTGCTG
GTGTTGTGCA AGGCCCACAA CCTGAGCGTG GCGCAACTGA TGATGGCCAA CGAATGCGCC
TGGCGCCCGG AGGCCGAGGT GCGCGAAGGC TTGTTGCGCA TCTGGGCGGC CATGCGTGAG
TGCGTGGCGA ACGGCCTGCG CAACGAGGGC ATCCTGCCGG GCGGCTTGCA CGTCAAGCGC
CGCGCCGCGC GGTTGCATCG CAGCCTGCAG GAGCTGGGCA AGCCCAACGT GATCGGCTCG
ACCCTTGGTG CCATGGAGTG GGTCAACCTG TTCGCCTTGG CGGTCAATGA AGAAAATGCT
GCCGGTGGGC GTATGGTTAC CGCGCCCACC AACGGGGCAG CCGGCATTAT CCCGGCGGTG
TTGCACTACT ACATGAAGTT CAACCCCAAT GCCTGCGATG CTGATGTGGT GGACTTCCTG
CTTGGCGCAG CGGCGGTTGG CATCCTGTGC AAAAAGAACG CCTCGATTTC CGGTGCCGAG
GTGGGTTGTC AGGGGGAGGT GGGCTCGGCC TGTTCGATGG CTGCTGCCGG CCTGGCGCAG
GTACTGGGCG CTACGCCGCC CCAGCTTGAA AACGCCGCCG AAATTGCCCT GGAGCACAAC
CTTGGGCTGA CCTGCGACCC GGTGGGCGGC CTGGTGCAGG TGCCGTGCAT CGAGCGCAAT
GCGATTGCTG CGGTCAAGGC GATCAACGCT GTGCAGATGG CGCTGCGGGG GGATGGCGAG
CACTTCATCT CGCTCGATCG GGTGATCCGC ACCATGCGTG ATACTGGCGC GGACATGCAT
GCCAATTACA AGGAAACCTC GCGCGGCGGT TTGGCGGTCG CTTTTGTCGA GTGCTGA
|
|---|
| Protein sequence | MAISVFDLFK IGIGPSSSHT VGPMRAAATF AQALREQGLL AQVTRVQVRL YGSLSATGVG
HATDRACLLG LMGQWPDCID PSTIESRIGQ VLQEHCLMLD GSHPLAFDYG RDMLLLDESL
PYHPNAMSLE AMDGQRSLLS QTYFSVGGGF IVEQAEIDAP ASEMNAVMLP YEFDSGAQLL
VLCKAHNLSV AQLMMANECA WRPEAEVREG LLRIWAAMRE CVANGLRNEG ILPGGLHVKR
RAARLHRSLQ ELGKPNVIGS TLGAMEWVNL FALAVNEENA AGGRMVTAPT NGAAGIIPAV
LHYYMKFNPN ACDADVVDFL LGAAAVGILC KKNASISGAE VGCQGEVGSA CSMAAAGLAQ
VLGATPPQLE NAAEIALEHN LGLTCDPVGG LVQVPCIERN AIAAVKAINA VQMALRGDGE
HFISLDRVIR TMRDTGADMH ANYKETSRGG LAVAFVEC
|
|---|
| |