| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3127 |
|---|
| Symbol | |
|---|
| ID | 1046774 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 3539311 |
|---|
| End bp | 3540849 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637146549 |
|---|
| Product | lipopolysaccharide biosynthesis protein |
|---|
| Protein accession | NP_745271 |
|---|
| Protein GI | 26989846 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
|---|
| TIGRFAM ID | [TIGR03007] polysaccharide chain length determinant protein, PEP-CTERM locus subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTCTG ACTACGAGCT CTCCCTCAGA GATTACATCG CCATTATCAA GGACAGGGCC
CTGGTGTTAG GGGTGAGTGC CGCAGTCATT CTCGCCGCGA CCGTGGCCGT CGCGTTGATG
GTGCCGCCGA TCTACCAGTC GACCGGCACC ATTCTGGTGG AGTCGCAGCA GATTTCGCCT
GAGCTGGTGT CGACCAACAA CACCAGCTTT GCCGATGAGC GCATCGAGGT GATCCGTCAA
CGGGTGATGA CCCGCGACAA CCTGCTGCGC ATCATCGGCA AGTACGACCT CTTCGCCGAC
AAGCGCTTCA GCGAAAGCGA CAAGATCGAC CAGATGCGCA ACGCGATCGT GGTCGAAACC
CTGACCACCT ACGTGCGCGG CCGTGGTGAA GCGACCGTGG CGTTCAATGT CTCGTTCGAG
CACAAACAGC CACAAGTAGC CAAGGAAGTC GCCGATGAAC TGGTGACGCT GTTCCTCAAC
GAAAACCTCA AGCAGCGCAC CGAGCGAGCC AACGAAACCA CCGAATTCCT CACCCAGGAA
GCCAACAAGC TGGGTGCCGA GCTGGCCAGC CTGGAAAACC AGCTGGCCGA TTTCAAGCAG
GCCCACGCCA ATGCCTTGCC CGAGCACCAG ACCCTGCGCA TGAACATGCT GTCGCGGGCG
GAGCTGGAAT TCCGTGAGGT CGACCGTGAC TACAAGGCTG CCCAGGAAGA GCTGCGCTAC
CTGGAACTGG AGCTGTCTGC GGCCAATGCC GGCCTTGCCA CCAAGGTTGC CGAGGGCACC
CGGCCAACCC GTGCCGACCT GCCCGAAGAC CTGCCAAGCC TGAAAGCCGA ATACGCGCAA
CTGCTGACCC GCTACAAGGA CGCCCACCCG GATGTCGTGG CGGTCAAGCG CAAGATCCAG
GCGCTCGAAG CCAGTGGGGG GCGCACTGCG GCAGTGTCCA CGGTCAGCCT CGACGCGGCC
CGTGTCCGCG CCAAGATGAG CGCCGCCCAG GTGCGTATTG CCTCGCTGGC AGAGCAAAAG
CGTGAGCTGA CCCGGAAAAT GGAAGGCTAC GAAGCCGAGA TCCTCGAGGC GCCGCAGGTC
GAGCGTGGCC TGGTGACCTT GATGCGAGAC CACGACAACG CGCGCAAGAA ATACGAAGAG
ATTCGTGCCA AGGAAATGGG CGCAAAGATT ACCGAAAGCC TGGAGCAGGA GAACAAGGCT
GAACGCTTTG TGCTGCTGGA GCCTCCCCTG TTGCCTGAGA AGCCGATCAA GCCTAACCGC
AAGAAAATCG CTGCGCTGGG CCTGGTGCTG GCACCGGCCG GTGGCGGTGC GCTGGTGATG
CTGCTGGAAA TGCTCAATCA GCGCGTGCGT GGCGTTGGCG CCCTGGAAAG CCTGCTGGGC
AAACGGGTGC TGGTGGCACT GCCCTATATC GATACCCGGG CCGACGTGGC CCGACGCAAG
CGCTGGCGCA ATCGACTGAT CCTGGCGGCA CTGGCGTTGG CAGCTATCAT GATAGGGCTG
GTGCACGTGT TCTACATGCC ACTGGATGTG CTGTTGTAA
|
|---|
| Protein sequence | MKSDYELSLR DYIAIIKDRA LVLGVSAAVI LAATVAVALM VPPIYQSTGT ILVESQQISP
ELVSTNNTSF ADERIEVIRQ RVMTRDNLLR IIGKYDLFAD KRFSESDKID QMRNAIVVET
LTTYVRGRGE ATVAFNVSFE HKQPQVAKEV ADELVTLFLN ENLKQRTERA NETTEFLTQE
ANKLGAELAS LENQLADFKQ AHANALPEHQ TLRMNMLSRA ELEFREVDRD YKAAQEELRY
LELELSAANA GLATKVAEGT RPTRADLPED LPSLKAEYAQ LLTRYKDAHP DVVAVKRKIQ
ALEASGGRTA AVSTVSLDAA RVRAKMSAAQ VRIASLAEQK RELTRKMEGY EAEILEAPQV
ERGLVTLMRD HDNARKKYEE IRAKEMGAKI TESLEQENKA ERFVLLEPPL LPEKPIKPNR
KKIAALGLVL APAGGGALVM LLEMLNQRVR GVGALESLLG KRVLVALPYI DTRADVARRK
RWRNRLILAA LALAAIMIGL VHVFYMPLDV LL
|
|---|
| |