| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3093 |
|---|
| Symbol | |
|---|
| ID | 1043929 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 3486664 |
|---|
| End bp | 3488007 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637146515 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_745237 |
|---|
| Protein GI | 26989812 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.131309 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAGC AGAGCCGGGT GATGTGGTCG GAAGGCATGT TCCTGCTGCC CCAGCACTTC
CAGTATCAGG ACGAATTCCA TCAGCACCAG TTGGCTGAGG CGACCCTGCG CAGCACCCCT
TTCCATTGGG GGGTTCAGGC GTTGCAGGTG GACGAGGACG CCCTGGCCAA TGGTTCACTG
CAGCTCAAGC GCCTGAAGCT GGTGTTCCCC GATGGCAGCC TCTACGACGC GCCGCAGCAC
GATCCGCTGC CGGCCGCGCG CGACCTCAAG GACCTGCTCA AGGCCAACGA CCTGAAGGTC
TATGCTGCGC TCAAGCTGCC CGAGCCATTC GGCCTCAACT ACGTCGAGGA TGGCCACGAA
CACAAGGCCG CACGGCGTTT CCGCAAGCAG TTCGACACCC TGCCCGACCT TAATGAAGGC
GAGCTGGAGA ACGAAATCAC CAGCTTGCGC CTGAACGTCG TACTGCTGGT CGACGGTGAC
AGCCTCGACG GTTACAGCCA CTGCCCTCTG GCCAAGCTGA CACGCAACAG CATGGGCGGT
TTCAACCTTG ACCCGCATTT CGTCCACCCC ACCTTGCACC TGGGCAGCCA CGAGACCATT
GCCGGCATCG GCAAACGCCT GCTCGGCGCC CTGCAGGCCA AGAGCAAGGC GCTTTCCGGC
CGGCGCCGCG AGCGCGCCGA CCAGATCGCC GAGTTCGGCT CCAGCGATGT AACCCTGTTC
TGGCTGCTGA ACACGGTCAA CCGTGCCCAC CCGCAGCTGG CTCATCTACT GGCCCACCCG
CGCCTGCACC CAGAGCGCCT GTACCTGTTC CTGGCCGACC TTGCCGGCGG CCTGCTGACC
TTCACCCTGG ACACCCAGCT CAGCGACATC CCCGAGTACG ACCACCACGA CCCGGCCGCG
TCGCTGGTCA AGCTCGACGA AATGATCCGG GTGATGCTCG ACAACGTCGT GCCCAACCAG
TGCATTGTCA TCAACCTGAC CCAGACCAAG CCATCGCACT GGCAAGGCCA ACTGCACGAC
CCGCGCCTGG CCGAAGCCGA CTTCTATATC GCCGTGCACG CCGACATGCC CGGCGCCAGC
CTGCTGGAGC TGGTGCCCCG TGCCTTCAAG GTCGGTTCGC CGGAAGACAT TGAAGTGGTG
GTCAACAGCG CCATGCCGGG TGTCACCCTC AATCATGCCG CGCGGCTGCC GAACGCGATT
CCGGTGCGCC TGGACAACCA GTACTTCGCC ATCGAGCCAC ACGGCACTGT GTATGAGCGA
ATGATCAGCG CCCAGGCCAT CTGCTTCTAT GCGCCCAGCG CCTTTACCAA CCTCAAGCTT
GAACTGATGG CGGTGCTCAA ATGA
|
|---|
| Protein sequence | MSKQSRVMWS EGMFLLPQHF QYQDEFHQHQ LAEATLRSTP FHWGVQALQV DEDALANGSL
QLKRLKLVFP DGSLYDAPQH DPLPAARDLK DLLKANDLKV YAALKLPEPF GLNYVEDGHE
HKAARRFRKQ FDTLPDLNEG ELENEITSLR LNVVLLVDGD SLDGYSHCPL AKLTRNSMGG
FNLDPHFVHP TLHLGSHETI AGIGKRLLGA LQAKSKALSG RRRERADQIA EFGSSDVTLF
WLLNTVNRAH PQLAHLLAHP RLHPERLYLF LADLAGGLLT FTLDTQLSDI PEYDHHDPAA
SLVKLDEMIR VMLDNVVPNQ CIVINLTQTK PSHWQGQLHD PRLAEADFYI AVHADMPGAS
LLELVPRAFK VGSPEDIEVV VNSAMPGVTL NHAARLPNAI PVRLDNQYFA IEPHGTVYER
MISAQAICFY APSAFTNLKL ELMAVLK
|
|---|
| |