| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3091 |
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| Symbol | |
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| ID | 1043910 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 3482117 |
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| End bp | 3485920 |
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| Gene Length | 3804 bp |
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| Protein Length | 1267 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637146513 |
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| Product | hypothetical protein |
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| Protein accession | NP_745235 |
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| Protein GI | 26989810 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.986291 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACAT TACTGCGTCT GTTGAAAAGT TTCTGGTTGC TGCTGCCATT GCTGTGGCTG
GCTAGCCTGT TGATTTGCTG GCTGGCCGCG CCGCTGGTGC CGTGGCTGCG TCATCACGTG
CCTGAAGCGC TGGCAATCAT CAGTGCCTGC TTCCTGCTGG TAATCGTGCT GCGCCAATAC
CAGCGTATTC GCGCCGAACA CAACCTGGAG AACCTGCTGC AGATCGAGGT CGACCGCTCG
TGGAATGCCA CTGGCGAGTT CCGTGACCAG CAGGTGCTGC GTGAGCGCCT GAAGCACGCC
ATCACCATGC TGCGCACCGA CCGCTCCGCC GGTGGCGGCG GCAAGGCGGC CCTGTCCGAC
CTGCCCTGGT ACCTGGTGGT CGGCATGTCG GCGGCCGGCA AGACCTCGCT GTTGACCCAT
TCCGGCCTGT CGGCCAGCAT CGCTACGGCC AACGACAGTG AAAGCGGCAC CCAGCACTGC
GACTGGTACT TCAGCCCCGA CGCCGTGATG ATCGACACCG CCGGGCGCTA CCTGCGCGAC
GACCAATCGG CCAGCGAGTT CTCGGCCTTT CTGCGCATGC TGCGTAAGCA GCGCGGCAAA
GCGGCGATCA ATGGCCTGGT CCTGGTGGTC AGCCTGCCCG AACTGCTGGC GGCCAACAGC
GATGAGCGCA ATGCCCTGGC TGCCCAGCTG GTGGCCCGGG TGGAAGAATA CGCCGAATGC
CTCGATGCCA ACCCGCCGGT TTACCTGATG CTGAGCAAGA CCGACCAGTT GCCGGGCTTC
AGCCAGGCTT TCGACGGCCT CGACCTGCAC GAACGCCAGC AGCCGCTGGG CATGACCTTT
GGCCTTTCGG AAATCCGCAC CAACGGCCTG CACGCCGTGC TGCAGACGCG CCTGAAGAAG
CTGCAAGCTC ATATTCGCCA GCACGTCGAC GCGCAGATGA TCGCCCTCGG TGCCGAAGCC
GACAGCACCC TGCTGAATTT CCCGCAGTAC TTCGCCGCCC TCAGCGGTGT GCTCGAGCAA
TTCCTCGAAC ACTTCACCCG CGGCCATCGC GGCGGTGCCC CGCTGCTGCT ACGTGGCCTG
TACTTCACCA GTGCACTGCA GAACGGGCAG CAACTGGGGC AGGTCTATGA AGACGTCATC
GCCGACGAAT TCGCCCTGCA GGCCGCCTAC GATGAACAGG CCGGGCACGT CGGCAAGGCC
CTGGGCAACC GCAGCTACTT CATCACCGAC ACTTTCCGCC AGGTGATCTT CCCCGACCGC
GACCTGATCC TTTACCAGTC GCGCCTGGGC CGCCAGGCTG CGTTCAGCCC GCTGCTACTG
GGCCTGGCCG CCGCCACCGG GTTGCTGTTC ATCGGTTGGC AAGCGCTGTC GTTCGCCAAT
AACCGCCAGT GGCTGGACAG CCTGCGCGGG CAGCTGGCGC ACATCGAACA GGCAGCAGAC
CGCGAGCAGC AGCTGGCCGC AGGCAAGGGC CTGGAAGTGC TGCGTGAGCA GATGGCCAAC
GTCAAGGCCC ATCGCCTGCA GGGAGTGCCC TTGCAGTTGG GTGGCGGCCT GTACCAGGGC
GAGGCGATTC ACCAGGTGAC CCGCAGCGCC TACCTGGCGC AGCTGCGCAG CCAGGCGCTG
GAACCGATCG CACGCAGCCT GCAAGTGCAG ATGCGGGCGT TCAATACCTT CGCCAACGGT
ATTAACCAGG AGCTGGAATT CACCCCGGCC CCGCAGCCGA AGAAGCGCAA TGGCAAGCCG
CTGGCCCCTG CCATTGCGGC CAGGGCCAAG GCCGCGCTGG GCAACACCCG CGCTGGCGCC
TATGCCGCCA AGGTCAACCT GGCCACTGCC AGCGATGGCG CCGAGCTGTC CGCCGCCACC
GGTGGGCTGT CACTGTCCGA AGAAATGCTC GGGCGCCTGG ACGAGCAGCA GGTGGCCTCG
ATCATCGAGG CCTACAACAC CCTCAAGCTG TACCTGTTGC TGACCGAGCC CCAGGCCCAT
CCAGACCCGG CCTTCGTCGC TGCCAGCCTG CCCCAGGCCT GGGCCAGCGC CGCAGGCGAA
GGCACCCCGG CCGACGCTGG CGTGATCGCA GAAAATGCCC CGCTGTACGT GCAGTTGCTG
GAGCAGGGCC AGGCGCCGTC GTTGCCGCGC AACGAACAGC TGATCAACGA AACCCGGCAG
AACCTCAAGT CGTTCATGAT CTCCAGCTCG CTGGTCGATC GCGAATACCT GCGCCTGCAG
CTCGAGTCGA GCCGGCAGTT CCCGGCGCTG AGCCTCAACG ACCTGGTCCC GCAACCAGGC
CGCGCGCTGC TGTACGGAAC CGCTGGTGTG CCGGCGATCT ACACCCGCCA GGGCTGGGAC
ACCTTCGTCA AGCCCGAGCT GATCAAGCTG GTGTCGGGCA ACCTGCGCAA CGAGTCGGAC
TGGGTGCTGG ACGGCGAAGG CGGCGATGCC CTCGTGCAGA AGGCCAACTT CGTGCGCGAG
TTCATGACCC GCTACAAGCG CGACTACACC CAGGCCTGGT ACAAGATGGT CAGCAGCGTT
GGCGTGCGCC ACTTCGCCGA CCTGGCCTCG GCGACCCGGG AGCTGGGGCT GTTGAGCGAC
GTACAGAACT CGCCAGTGAA GAACCTGCTG CAGGCGGTCA ACGACAATAC CCAGTGGGAC
CTGCCGGTCA AGCAGGCCAT CCCGGCCCCA GGCACCAGCC GCGATGACGG TTTCTGGAGC
AAGGTCACCG GTCTGTTCGA CGCCAACGAC ACCCTGCCTG CCAACGTCGC CCCGGCCCTG
CCGGCGGTGG ACGACGGCAG CCTGGCCAAG CGCTTCGAGC CGGTGGCGCG GGTGTTCGCC
GAAAACAACG CCGAAGGCGC CGACAGCACC ATCATGGATC GCTACCTGGC CGCCTTGCGC
AAACTCAAGG TGCGCATGAA CAACATCCAG CGCTCGCAGG ATGTGGGCAA GAGCAGCAAA
CAGTTGATCA GCGAGACCCT GGAAGGCCAG CCGAGCGAGA TCACCACCGT GCGCAACTAC
GTGGAAAGCA GCGTCGACAC CAGCCAGGAT GGCCTGTCGC GCTCGCTGCA GGGGCTGTTC
AGCCTGCCCA TCCAGTATGC CTGGGCGACC CTGCGCGACC CGGCCGGCGA GCAGATCGCC
AAGGCCTGGG CGCAGCAGAT CGCCAAGCCC TGGGAGCAGG TCATGGCACA CCGTTACCCG
ATTGCCGGCA GCAGCCGCAA CGAGGCTTCG GTGAAAGACC TGCAACGCTT CGTAGATCCC
GACAGCGGCC TGCTGCCGGC CTTCAAACGC AACGAAATCG GCAACTTGGC CGGTGGTGAA
GGTCTGGGTG TAGGCGATGG CAAGGGGCCG GCGCTGGTCA ACCCTGGCAT GCTCAACAGC
ATCGACAAGG CCAGCTCCGT GGGCCAGGTG ATCGCCAGCC TGTCAGACCG TGACAACGGC
TTCGAAATCA TGCTGGAGCC TTCAGCCAAC TTCACCGACA TCGTCTTCAC CCTCGATGGC
CAGGAGCAGC ACTACCGCAA CGGCCGCAGC AGCTGGAACC GCTTCGCCTG GCCGGGCACC
AGCACCGCGC CGGGCGCGCG CCTGGACGTC GTCACCCTGA GCGGCACACG GGTCACCGTG
TTCGACTTCC CAGGGCGGTG GGGCCTGCTG CGCATGAATG AGAGCGCTCG GGTCGACGAC
CTGGACGGCA TTCAGCAACG CTTCAGCTGG AACACCGCCA GCGGCCGCGT AAGCCTTGTC
GTGCGCAACT TCGGCGGGGT CAAGCTGACC GATCTGGGTG ACGTCAAGGC CCTGAGCGCC
CTCAACAGCA GGGGCGCGCA ATGA
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| Protein sequence | MKTLLRLLKS FWLLLPLLWL ASLLICWLAA PLVPWLRHHV PEALAIISAC FLLVIVLRQY
QRIRAEHNLE NLLQIEVDRS WNATGEFRDQ QVLRERLKHA ITMLRTDRSA GGGGKAALSD
LPWYLVVGMS AAGKTSLLTH SGLSASIATA NDSESGTQHC DWYFSPDAVM IDTAGRYLRD
DQSASEFSAF LRMLRKQRGK AAINGLVLVV SLPELLAANS DERNALAAQL VARVEEYAEC
LDANPPVYLM LSKTDQLPGF SQAFDGLDLH ERQQPLGMTF GLSEIRTNGL HAVLQTRLKK
LQAHIRQHVD AQMIALGAEA DSTLLNFPQY FAALSGVLEQ FLEHFTRGHR GGAPLLLRGL
YFTSALQNGQ QLGQVYEDVI ADEFALQAAY DEQAGHVGKA LGNRSYFITD TFRQVIFPDR
DLILYQSRLG RQAAFSPLLL GLAAATGLLF IGWQALSFAN NRQWLDSLRG QLAHIEQAAD
REQQLAAGKG LEVLREQMAN VKAHRLQGVP LQLGGGLYQG EAIHQVTRSA YLAQLRSQAL
EPIARSLQVQ MRAFNTFANG INQELEFTPA PQPKKRNGKP LAPAIAARAK AALGNTRAGA
YAAKVNLATA SDGAELSAAT GGLSLSEEML GRLDEQQVAS IIEAYNTLKL YLLLTEPQAH
PDPAFVAASL PQAWASAAGE GTPADAGVIA ENAPLYVQLL EQGQAPSLPR NEQLINETRQ
NLKSFMISSS LVDREYLRLQ LESSRQFPAL SLNDLVPQPG RALLYGTAGV PAIYTRQGWD
TFVKPELIKL VSGNLRNESD WVLDGEGGDA LVQKANFVRE FMTRYKRDYT QAWYKMVSSV
GVRHFADLAS ATRELGLLSD VQNSPVKNLL QAVNDNTQWD LPVKQAIPAP GTSRDDGFWS
KVTGLFDAND TLPANVAPAL PAVDDGSLAK RFEPVARVFA ENNAEGADST IMDRYLAALR
KLKVRMNNIQ RSQDVGKSSK QLISETLEGQ PSEITTVRNY VESSVDTSQD GLSRSLQGLF
SLPIQYAWAT LRDPAGEQIA KAWAQQIAKP WEQVMAHRYP IAGSSRNEAS VKDLQRFVDP
DSGLLPAFKR NEIGNLAGGE GLGVGDGKGP ALVNPGMLNS IDKASSVGQV IASLSDRDNG
FEIMLEPSAN FTDIVFTLDG QEQHYRNGRS SWNRFAWPGT STAPGARLDV VTLSGTRVTV
FDFPGRWGLL RMNESARVDD LDGIQQRFSW NTASGRVSLV VRNFGGVKLT DLGDVKALSA
LNSRGAQ
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