| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3073 |
|---|
| Symbol | bdhA |
|---|
| ID | 1043762 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 3456515 |
|---|
| End bp | 3457285 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637146495 |
|---|
| Product | 3-hydroxybutyrate dehydrogenase |
|---|
| Protein accession | NP_745217 |
|---|
| Protein GI | 26989792 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | [TIGR01963] 3-hydroxybutyrate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.171259 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.789258 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCTTG AAGGCAAAAC TGCACTCGTC ACCGGTTCCA CCAGCGGCAT TGGCCTGGGC
ATCGCCCAGG TATTGGCCCG GGCTGGCGCC AACATCGTGC TCAACGGCTT TGGTGACCCG
GGCCCCGCCA TGGCGGAAAT TGCCCGGCAC GGGGTGAAGG TTGTGCACCA CCCGGCCGAC
CTGTCGGATG TGGTCCAGAT CGAGGCTTTG TTCAACCTGG CCGAACGCGA GTTCGGCGGC
GTCGACATCC TGGTCAACAA CGCCGGTATC CAGCATGTGG CACCGGTTGA GCAGTTCCCG
CCAGAAAGCT GGGACAAGAT CATCGCCCTG AACCTGTCGG CCGTATTCCA TGGCACGCGC
CTGGCGCTGC CGGGCATGCG CACGCGCAAC TGGGGGCGCA TCATCAATAT CGCTTCGGTG
CATGGCCTGG TCGGCTCGAT TGGCAAGGCA GCCTACGTGG CAGCCAAGCA TGGCGTGATC
GGCCTGACCA AGGTGGTCGG CCTGGAAACC GCCACCAGTC ATGTCACCTG CAATGCCATA
TGCCCGGGCT GGGTGCTGAC ACCGCTGGTG CAAAAGCAGA TCGACGATCG TGCGGCCAAG
GGTGGCGATC GGCTGCAAGC GCAGCACGAT CTGCTGGCAG AAAAGCAACC GTCGCTGGCT
TTCGTCACCC CCGAACACCT CGGTGAGCTG GTACTCTTTC TGTGCAGCGA GGCCGGTAGC
CAGGTTCGCG GCGCCGCCTG GAACGTCGAT GGTGGCTGGT TGGCCCAGTG A
|
|---|
| Protein sequence | MTLEGKTALV TGSTSGIGLG IAQVLARAGA NIVLNGFGDP GPAMAEIARH GVKVVHHPAD
LSDVVQIEAL FNLAEREFGG VDILVNNAGI QHVAPVEQFP PESWDKIIAL NLSAVFHGTR
LALPGMRTRN WGRIINIASV HGLVGSIGKA AYVAAKHGVI GLTKVVGLET ATSHVTCNAI
CPGWVLTPLV QKQIDDRAAK GGDRLQAQHD LLAEKQPSLA FVTPEHLGEL VLFLCSEAGS
QVRGAAWNVD GGWLAQ
|
|---|
| |