| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3065 |
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| Symbol | gpD |
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| ID | 1043649 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 3445604 |
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| End bp | 3446647 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637146487 |
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| Product | pyocin R2_PP, tail formation |
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| Protein accession | NP_745209 |
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| Protein GI | 26989784 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3500] Phage protein D |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.561868 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.32013 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACCCA CGTATCAAAT CGTCGCGGAT GGCAGCGACA TTACCGCGCT GATCAATGAC
CGGCTGTTGC TGCTACGCAC ATCGGACAAG CCCGGCATGG AGTCGGACGA GTTCGAGCTG
CGCATTGACG ACCGCGACCA GGCTGTTGCG CTGCCGGCAC GCGGTAGCAA CGTCGTGGTC
ATGATGGGCT ACGAGGGCCA AGGGCTGACC CGCTTGGGCG CATACACCGT CGACGAGGTG
GAATTGAGCG GGCCGCCCGA CACCATCGTC ATTCGCGGCA AGGCCAGCGA CATGCGCGGC
AGCGGCAAGA CCGTGCGTAG CGGCAGCTGG GAGAACGTGC CGCTGTCGCA GATCGTTGGC
GAAATCGCCA AGCGCAACGG CTGGGAGGTG TCTTGCCCGG TCGACACCAA GGTCGAGCGC
GTCGACCAGC GCAATGAGTC GGATTACAAC TTTGTCACCC GCCTGGCCAA GCAGTACGAC
TGCACCGCCA AGGTGGCCGA AAGCAAGCTG CTGGTGATGC CGCGCCAAGG CGGGCAAAGC
ACCACTGGCA AGGCGCTGGC GGTCGTCACC ATCAATAAGA CGTACGTTTC CCGCTACCAG
TTCCGCCTCG GTGATCGCAA CTCGCAGAAG GCGGTGAAGA CCCAGCACCA GGACCCGAAG
ACGGGCAAGT TGCAGGTGGT CGAGCTGGCC AACGACGAGT CGCCGGACGG CCTGCCGCCG
GTGCACACCG ACCGTCATGT CTACCCCAAC AAAACCTCTG CCCAGCAGGC CGCCAAGGCG
CGCCTGGCTG CGTTCAATCG CAGCACCGCC GGCGTGCGGC TGGAAATGCC CGGCCGCACC
GACCTGTTTG CCGAACGCTC GATCAACGCC CAAGGCTTCA AGCCGGGGCT CGATGGCGAG
TACCTGGTGG ACGGGGTCGA GCAGGTATTT ACCCAGTCCG GCTGGACTAC GACCGTCGAG
TGCAACGGCG GCAAGAAGGG CAAGGCCAAG GCCTCGGGCA AGAAAAAGAA AGACACCAAG
CCGCTCAAGG TTGAGCAGCT GTAA
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| Protein sequence | MKPTYQIVAD GSDITALIND RLLLLRTSDK PGMESDEFEL RIDDRDQAVA LPARGSNVVV
MMGYEGQGLT RLGAYTVDEV ELSGPPDTIV IRGKASDMRG SGKTVRSGSW ENVPLSQIVG
EIAKRNGWEV SCPVDTKVER VDQRNESDYN FVTRLAKQYD CTAKVAESKL LVMPRQGGQS
TTGKALAVVT INKTYVSRYQ FRLGDRNSQK AVKTQHQDPK TGKLQVVELA NDESPDGLPP
VHTDRHVYPN KTSAQQAAKA RLAAFNRSTA GVRLEMPGRT DLFAERSINA QGFKPGLDGE
YLVDGVEQVF TQSGWTTTVE CNGGKKGKAK ASGKKKKDTK PLKVEQL
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