| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2964 |
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| Symbol | tnpA |
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| ID | 1042972 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 3366692 |
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| End bp | 3369706 |
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| Gene Length | 3015 bp |
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| Protein Length | 1004 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637146386 |
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| Product | Tn4652, transposase |
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| Protein accession | NP_745108 |
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| Protein GI | 26989683 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4644] Transposase and inactivated derivatives, TnpA family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0744329 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGTTCAA TGGCATCGGT GGAAAGAACA GCCTACCCTA TCTTGCCCAG TCAGCTACCG
GCCAAGGAGC TTCATCGAAG CTATTCCCTG TCTGATTCAG AGATCGAATG GGTCAACAAC
ACCGCTAAGA GTCCAGCGCT CTCGATTGGG CTGGCAATCC AGTTAAAGGT GTTTCAGCAG
CTGCACTATT TCGTTCCGTT CGAGGAGCTT CCTCAGGAAC TCATCAGTCA TGTCCGGCAA
TGCCTCCGCT ACGGCGCACG AATAGCTCCA CGCTATAGCA ATCCCCGCAC CCTTTACCGG
CACCAAGCAG CGGTACGGCA GTACCTGCAG GTTACCCCCT TCTACAGCAG CGACGGGCTA
GCGGTCACTG AGCAGATCGC ACGTGACTGC GCTGTAGTTC TTGAGCAGCG AGTCGATCTC
ATCAATGCCA TGCTTGATGA GCTGATTCAG CGTGGCTATG AGCTTCCGGC TTATTCGACG
CTCAACAACC TCGCAGAAAC CGCCTTGGCG AGTGCCCAGG AAGTTACCTT CAACCTAGTC
GTGACTCGAG CGCCAATCGA GGTGATCTAC AAGCTGAAGG AGCTGCTCGA CACCGACTTC
GGCCGGCGCC AGAGCGATTT CAATGCGCTG AAACAGGCAC CCAAGAAGCC ATCTCGCAAG
CACCTGGAGG TGCTGATCGA CCACTTGGCC TGGCTAGAGA GCTTCGGGGA CCTGGAGGCC
ATCTTTGAGG GGATCGTCGA TGCCAAGATT CGCCACTTTG CTGCCCAAGC CGCGGCGGCG
GACGTCTCCG AGCTGAAGGA CTGCTCGCTG CCGAAGCGCC ACACGCTGAT GCTGGCCTTG
ATATATCGAA TGCGTGTGCG AACTCGGGAC CACCTGGCCG AGATGTTCAT CCGGCGGATT
TCGACGATCC ATAAACGCGC CAAGGAGGAG CTGGAACAAA TCCAGGCGCG ACAACGCCAG
AAGCTGGAGC AGTTGGCGGC GACCCTGGAC GGCGTGGTGC AGATTCTGGT TCAAGAACCG
GATGACCAGG AAGCTGGCAG CCTGATTCGG GAATACCTCT CCCCTGATGG CAATCTGGAT
CGGTTGCGTG AGACTTGCGC CGAAGTCCAA GCTACCGGCG GTAATAACTA CCTGCCGTTG
ATCTGGAAGC ACTTCAGGTC CCATCGCTCG CTGTTGTTCC GTCTCAGTCA CCTTCTCCAA
CTGGAGCCCA CGACTCAGGA TCGGTCGCTG ACTCAGGCAC TTCAACTGAT CCAGGACAGC
GAGAATCTAC ACCGCGAATG GATCGACGAG CACGTCGATT TGTCGTTTGC GTCGGAGCGC
TGGGTCAAGG TCGTTCGTCG CCCTTCGAGT GAGGGGCCAC CGACCAACCG GCGCTATCTG
GAAGTTTGCG TTTTCTCCTA CCTGGCCAGC GAGCTGCGAT CCGGCGACAT GTGCGTACAA
GGGTCGGTAT CCTTCGCCGA CTATCGCAAG CAGTTGCTAC CCTGGGAGGA ATGTCTCCAG
CGACTACCGG CCTACTGCGA AAAGATGGGG CTGCCTGGCA CAGCGAAGGA GTTTGTTGCC
TCTCTCAAGA CCCAGTTGGA GGAAACCGCG CAACAACTGG ACGAGAAATT CCCATCATGC
CGAGGGGACG TATCGATTAA CGAAGCTGGA GAACCGGTGT TGCGCCGAGT AGCGGCGCGG
GACATCCCCC CTTCGGCCAT CTCGCTGCAG ACGGCGCTTA TGCAGCGCAT GCCGGCCAGG
CATGTGCTCG ATATCATGGC TAACATCGAG CATTGGATTC AGTTCACGCG GCATTTCGGG
CCCATGTCCG GTAACGAGCC GAAGCTCAAA GAGCCTGCCG AGCGCTACCT GATGACGATC
TTCGCCATGG GCTGCAACCT AGGCCCTAGC CAGGCTGCAC GGCATCTGAC CGGTAATGTC
ACGCCACACA TGCTGTCCTA TACGAATCGC CGTCACCTCT CGCTGGAAAA ACTGGACAAG
GCTAACCGCG AGTTGGTGGA ACTCTACCTT CAACTTGATC TGCCCAAGCT CTGGGGCGAT
GGCAAGGCGG TGGCTGCGGA CGGCACGCAG TTCGACTTCT ATGATGACAA CCTGCTGGCC
GGCTACCACT TTCGCTACCG CAAAATGGGA GCCGTGGCCT ATCGGCACGT GGCCAACAAC
TACATCGCCG TGTTCCAGCA CTTCATCCCG CCGGGCATCT GGGAGGCGAT CTACGTGATC
GAGGGGCTGC TCAAGGCTGA TCTCAGCGTC GAGGCTGACA CGGTGTACTC CGATACCCAA
GGGCAGTCGG CCACGGTGTT TGCCTTCACC CATCTGTTGG GCATCAATCT GATGCCACGT
ATTCGCAACT GGCGCGACCT GGTGATGTGC CGGCCGGATC GCGGTGCTTC GTACAAGCAT
ATCAACCGCC TGTTCACCGA CACTGCCGAC TGGAACTTGA TCGAAACCCA CTGGCAGGAT
CTGATGCAGG TCGCATTGTC GATCCAGGCC GGCAAGATTT CCTCGCCCAT GCTGCTGCGC
AAACTCGGCT CCTACAGCCG GCGCAACAAG CTCTACCATG CGGCTCAGGC ACTGGGCAGC
GTGATCCGTA CGATCTTCTT GCTCAACTGG ATCGGCAGTC GCGAGTTGCG CCAGGAGGTC
ACCGCGAACA CCAACAAGAT CGAGTCCTAC AACGGTTTCT CCAAGTGGTT ATCTTTCGGC
GGCGATGTGA TTGCTGAAAA CGATCCGGAC GAGCAGCAGA AACGGCTGCG CTACAACGAC
ATGGTGGCCT CGTCGGTGAT CCTGCAGAAC ACTGTGGACA TGATGCGCAT CCTGCATAAA
CTGGCCCGCG AGGGCTGGCA GTTCACCGAT GAGGACGTGT CGTTCCTCAG CCCCTACCTG
ACCAGCAACG TCAAGCGCTT CGGTGAGTTC AACCTCAAGC TCAATAGGCC ACCGGAGCCC
TGGATCAAGG ACTCGGTATT CCAACAGGCC GCCGGCTCGC TTCGAGCCAA CACGGCCAGC
AAGACCGGTG CCTAG
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| Protein sequence | MCSMASVERT AYPILPSQLP AKELHRSYSL SDSEIEWVNN TAKSPALSIG LAIQLKVFQQ
LHYFVPFEEL PQELISHVRQ CLRYGARIAP RYSNPRTLYR HQAAVRQYLQ VTPFYSSDGL
AVTEQIARDC AVVLEQRVDL INAMLDELIQ RGYELPAYST LNNLAETALA SAQEVTFNLV
VTRAPIEVIY KLKELLDTDF GRRQSDFNAL KQAPKKPSRK HLEVLIDHLA WLESFGDLEA
IFEGIVDAKI RHFAAQAAAA DVSELKDCSL PKRHTLMLAL IYRMRVRTRD HLAEMFIRRI
STIHKRAKEE LEQIQARQRQ KLEQLAATLD GVVQILVQEP DDQEAGSLIR EYLSPDGNLD
RLRETCAEVQ ATGGNNYLPL IWKHFRSHRS LLFRLSHLLQ LEPTTQDRSL TQALQLIQDS
ENLHREWIDE HVDLSFASER WVKVVRRPSS EGPPTNRRYL EVCVFSYLAS ELRSGDMCVQ
GSVSFADYRK QLLPWEECLQ RLPAYCEKMG LPGTAKEFVA SLKTQLEETA QQLDEKFPSC
RGDVSINEAG EPVLRRVAAR DIPPSAISLQ TALMQRMPAR HVLDIMANIE HWIQFTRHFG
PMSGNEPKLK EPAERYLMTI FAMGCNLGPS QAARHLTGNV TPHMLSYTNR RHLSLEKLDK
ANRELVELYL QLDLPKLWGD GKAVAADGTQ FDFYDDNLLA GYHFRYRKMG AVAYRHVANN
YIAVFQHFIP PGIWEAIYVI EGLLKADLSV EADTVYSDTQ GQSATVFAFT HLLGINLMPR
IRNWRDLVMC RPDRGASYKH INRLFTDTAD WNLIETHWQD LMQVALSIQA GKISSPMLLR
KLGSYSRRNK LYHAAQALGS VIRTIFLLNW IGSRELRQEV TANTNKIESY NGFSKWLSFG
GDVIAENDPD EQQKRLRYND MVASSVILQN TVDMMRILHK LAREGWQFTD EDVSFLSPYL
TSNVKRFGEF NLKLNRPPEP WIKDSVFQQA AGSLRANTAS KTGA
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