| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2914 |
|---|
| Symbol | proP |
|---|
| ID | 1042847 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 3313951 |
|---|
| End bp | 3315453 |
|---|
| Gene Length | 1503 bp |
|---|
| Protein Length | 500 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637146336 |
|---|
| Product | proline/glycine betaine transporter |
|---|
| Protein accession | NP_745058 |
|---|
| Protein GI | 26989633 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00883] metabolite-proton symporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.839203 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCTC GCAAGAAAAG CGTCCAGCCA ATCGGCCTGA AGGACATCAC CATCGTCGAC
GACGCCAAGA TGAAGAAGGC GATCACAGCC GCCGCGCTGG GCAACGCCAT GGAGTGGTTC
GACTTTGGGG TATATGGCTT CGTCGCTTAT GCCTTGGGCA AGGTGTTTTT CCCCAACGCC
GACCCCAGCG TGCAAATGAT CGCGGCCTTG GCCACCTTCT CGGTACCGTT CCTGATCCGG
CCTCTTGGCG GGTTGTTCTT CGGCGCCTTG GGCGACAGGT TCGGGCGGCA GAAAATCCTC
GCCGCGACCA TCGTGATCAT GTCCCTGAGC ACCTTCGCCA TCGGCCTGAT ACCGTCCTAT
GCAAGCATTG GTATCTGGGC GCCGATCCTG TTGCTGCTGG CCAAGATGGC CCAGGGCTTT
TCGGTGGGTG GCGAATACAC CGGTGCCTCG ATTTTCGTTG CCGAGTACGC GCCTGACCGC
AAGCGCGGCT TTCTCGGCAG CTGGCTGGAT TTCGGTTCGA TTGCCGGCTT TGTACTGGGC
GCAGGGGTGG TGGTGCTCAT TTCCACGGTG CTGGGTGAAG AAAAATTCCT CGACTGGGGC
TGGCGCCTGC CGTTCTTCCT GGCCCTGCCG CTGGGCATCA TCGGCCTTTA CCTGCGCCAT
GCGCTGGAAG AAACACCTGC GTTCCAGCAG CACGTCGACA AGCTGGAGCA GGGCGATCGT
GAAGGCCTGG CGTCCGGGCC CAAGGTGTCG TTCAAGGAGG TGGCCACCCA GCACTGGCGC
AGCCTGGTGA CCTGCATCGG CGTGGTAATT GCCACCAATG TCACCTACTA CATGCTGCTT
ACCTACATGC CCAGCTACCT GTCGCACAAC CTGCACTACA GCGAAGACCA TGGCGTGCTG
ATCATCATCG CGATCATGGT CGGCATGCTG TTCGTGCAGC CGATCATCGG CCTGCTCAGC
GACAAGTTTG GCCGACGGCC GTTCATCATT GTCGGCAGTG TCGGCCTGCT GGCCTTGGCC
ATTCCGGCAT TCATGCTCAT CAACAGTGGG GTGCTAGGGC TTATTTTCGC CGGCCTGCTG
ATCATTGCCG TGCTGCTGAA CTTCTTCATC GGTGTGATGG CCTCGACGCT GCCGGCCATG
TTCCCCACGC ACATCCGTTA CAGCGCCCTG GCCAGCGCTT TCAACATCTC GGTGCTGATC
GCCGGCCTTA CCCCAACCCT CGCTGCGTGG CTGGTGGAGA CCACAAACGA CCTGTACATG
CCGGCCTATT ACCTGATGGT GATCGCCGCT GTCGGCCTGG TCACCGGCCT GACCATGAAG
GAAACCGCCA ACAAGCCCCT GCGCGGCGCG GCACCCGCGG CATCGGACAT CGAAGAGGCG
CGTGAACTGC TACAGGAGCA CCACGACAAC ATCGAGCAGA AGATCGAGGA CATCGATGCG
CAGATCGCCG AGCTGGAAGC CAAGCGCGAG AAACTGGCAC TGCAGCACCC GCGCATCGAA
TGA
|
|---|
| Protein sequence | MKPRKKSVQP IGLKDITIVD DAKMKKAITA AALGNAMEWF DFGVYGFVAY ALGKVFFPNA
DPSVQMIAAL ATFSVPFLIR PLGGLFFGAL GDRFGRQKIL AATIVIMSLS TFAIGLIPSY
ASIGIWAPIL LLLAKMAQGF SVGGEYTGAS IFVAEYAPDR KRGFLGSWLD FGSIAGFVLG
AGVVVLISTV LGEEKFLDWG WRLPFFLALP LGIIGLYLRH ALEETPAFQQ HVDKLEQGDR
EGLASGPKVS FKEVATQHWR SLVTCIGVVI ATNVTYYMLL TYMPSYLSHN LHYSEDHGVL
IIIAIMVGML FVQPIIGLLS DKFGRRPFII VGSVGLLALA IPAFMLINSG VLGLIFAGLL
IIAVLLNFFI GVMASTLPAM FPTHIRYSAL ASAFNISVLI AGLTPTLAAW LVETTNDLYM
PAYYLMVIAA VGLVTGLTMK ETANKPLRGA APAASDIEEA RELLQEHHDN IEQKIEDIDA
QIAELEAKRE KLALQHPRIE
|
|---|
| |