| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2911 |
|---|
| Symbol | |
|---|
| ID | 1042844 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 3310284 |
|---|
| End bp | 3311675 |
|---|
| Gene Length | 1392 bp |
|---|
| Protein Length | 463 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637146333 |
|---|
| Product | GABA permease |
|---|
| Protein accession | NP_745055 |
|---|
| Protein GI | 26989630 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
|---|
| TIGRFAM ID | [TIGR01773] gamma-aminobutyrate permease |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.582601 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACCC ACAAGAACAA TTTGAGTCAT GGATTGAAAT CACGGCATGT CACCATGCTG
TCCATTGCCG GCGTGATCGG CGCCGGGCTG TTTGTCGGCT CTGGCCGCGC CATCGCCGAA
GCGGGGCCTG CCACCATCCT GGCCTATATC CTGGCGGGCG GCCTGGTGGT GCTGGTGATG
CGCATGCTGG CTGAAATGGC TGTGGCCTCC CCGGACACCG GCTCGTTTTC AACCTACGCT
GACCTCGCCA TCGGCAAATG GGCCGGTTAC ACCATCGGTT GGCTGTACTG GTGGTTCTGG
GTGCTGATCA TTCCGATCGA GGCCAATATC GCCGCTACCA TCATCAACTC CTGGGTCCCG
CAGCTGGAGA TCTGGGTGTT GTCGTTGGTG ATCACGTTGC TGCTGACGGC CACCAACCTG
TTCAGCGTGA AGAATTACGG TGAGTTCGAG TTTTGGCTGG CACTGGTCAA GGTGGTGGCC
ATCGTCAGCT TCATCGCCCT GGGTGTTTGC GCCATTTTCG GCCTGTTGCC GGGGGCCGGC
GTCAGCGGCG TCTCGCGCCT GTGGGATACG GGGGGCTTCA TGCCCAACGG CTTTGGTGCG
GTGCTGAGCG CGATGCTGAT CACCATGTTC TCGTTCCTCG GGGCCGAGGT GGTGACCATT
GCTGCGGCTG AGTCCGACGA GGCGGGCAAG CATATTTCCA AGGCCACCAA TTCGGTGATC
TGGCGGATAA CGCTGTTCTA CATCCTGTCG ATCTTCATCG TCATCGCATT GGTACCGTGG
ACCGACCCAC GCCTGGCGAC CGAAGGCTCT TATGTCACGG TGCTGGACAC CCTCGGCGTG
CCAAATGCCA AGGCCATCAT CGACTTCGTG GTGCTGACGT CGGTGACCAG CTGCCTCAAC
TCGTCGCTGT ACACCGCCTC GCGCATGGTC TATTCGCTTA GCCGCCGGGG TGATGCCCCG
GCCTGTGCCC AGATAACCAG CCGCAGTGGT ACACCCGTGG TGGCAGTCTT GTTGTCGACT
GGGGCTGCAT TCCTGGCGGT GATCGCCAAC TACCTGGTGC CGGCCAAGGT GTTTGGCTTC
CTCATGGCAA GCTCCGGCGC CATTGCCTTG CTGGTGTATC TGGTCATCGC CATTTCCCAG
CTGCGCCTGC GCCAGCGCCT GACGGCACAG GGCAAGACAC TGGGTTATCG CATGTGGCTG
TTCCCGTGGC TGACCTGGGG CGTGATCCTG TTCATCAGCG GCGTACTGGT ATTGATGCTG
TTCCGCCCGG ATCATCGCCT GGAAGTGGTC TCGACGATGG TGCTGGCGGT GTTGGTGGTG
TGCTCGGGGG TGCTGGTGAC CCGGCGCCGG GCGCGCGGCG GGGCCGTGGC TGGCGTAGGG
CAGGGCGCCT GA
|
|---|
| Protein sequence | MQTHKNNLSH GLKSRHVTML SIAGVIGAGL FVGSGRAIAE AGPATILAYI LAGGLVVLVM
RMLAEMAVAS PDTGSFSTYA DLAIGKWAGY TIGWLYWWFW VLIIPIEANI AATIINSWVP
QLEIWVLSLV ITLLLTATNL FSVKNYGEFE FWLALVKVVA IVSFIALGVC AIFGLLPGAG
VSGVSRLWDT GGFMPNGFGA VLSAMLITMF SFLGAEVVTI AAAESDEAGK HISKATNSVI
WRITLFYILS IFIVIALVPW TDPRLATEGS YVTVLDTLGV PNAKAIIDFV VLTSVTSCLN
SSLYTASRMV YSLSRRGDAP ACAQITSRSG TPVVAVLLST GAAFLAVIAN YLVPAKVFGF
LMASSGAIAL LVYLVIAISQ LRLRQRLTAQ GKTLGYRMWL FPWLTWGVIL FISGVLVLML
FRPDHRLEVV STMVLAVLVV CSGVLVTRRR ARGGAVAGVG QGA
|
|---|
| |