| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2890 |
|---|
| Symbol | xthA |
|---|
| ID | 1042796 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 3287297 |
|---|
| End bp | 3288109 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637146312 |
|---|
| Product | exonuclease III |
|---|
| Protein accession | NP_745034 |
|---|
| Protein GI | 26989609 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0708] Exonuclease III |
|---|
| TIGRFAM ID | [TIGR00195] exodeoxyribonuclease III
[TIGR00633] exodeoxyribonuclease III (xth) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00987023 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.852311 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCG TCTGTTTCAA CATCAACGGC CTGCGGGCCC GCCCGCATCA GCTGGCGGCG
CTGATCGAAA AGCACCAGCC GGACGTGATC GGCCTGCAGG AAACCAAGGT CAGCGACGAT
CAGTTCCCGC TGGCCGACGT GCAGGCACTG GGTTACCACG TGCACTACCA TGGCCAGAAA
GGCCACTACG GCGTGGCCCT GCTGTCGCGC CAACCGCCGC TGAGCCTGCA CAAGGGCTTT
GCCACCGACG AAGAGGATGC CCAGCGCCGC TTCATCTGGG GTACCTTTGC CGATGCCAAC
GGCAGCCCGA TCACCATCAT GAACGGCTAT TTCCCCCAAG GCGAAAGCCG CGACCACCCC
ACCAAGTTCC CGGCCAAGCA GCGCTTCTAC AGCGACCTGC AGGCACTGCT GGAAAGCCAG
TTCCGCAACG ACCAGCCAGT GCTGGTGATG GGCGACATGA ACATCTCGCC GCAAGACTGT
GATATCGGCA TTGGCCCGGA CAACGCCAAA CGCTGGCTGA AGACCGGCAA GTGCAGCTTC
CTGCCGGAGG AGCGTGAGTG GATGGAACGT TTGAAAGGCT GGGGGTTGGT AGACAGCTTC
CGCCACCTGT ACCCGGACGT GACCGACCGT TTCAGCTGGT TCGACTACCG AAGCCGCGGC
TTCGAGGACG AGCCCAAGCG CGGCCTGCGC ATCGACCTGA TCATGGCCTC ACAGCAGCTG
GTGCCGCGCA TCAAGGCAGC GGGCGTGGAC TATGAGCTGC GCGGGATGGA AAAGCCGTCG
GACCATGCGC CGATCTGGCT GGAGTTGAGC TGA
|
|---|
| Protein sequence | MKIVCFNING LRARPHQLAA LIEKHQPDVI GLQETKVSDD QFPLADVQAL GYHVHYHGQK
GHYGVALLSR QPPLSLHKGF ATDEEDAQRR FIWGTFADAN GSPITIMNGY FPQGESRDHP
TKFPAKQRFY SDLQALLESQ FRNDQPVLVM GDMNISPQDC DIGIGPDNAK RWLKTGKCSF
LPEEREWMER LKGWGLVDSF RHLYPDVTDR FSWFDYRSRG FEDEPKRGLR IDLIMASQQL
VPRIKAAGVD YELRGMEKPS DHAPIWLELS
|
|---|
| |