| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2845 |
|---|
| Symbol | ureC |
|---|
| ID | 1042749 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 3248378 |
|---|
| End bp | 3250081 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637146267 |
|---|
| Product | urease subunit alpha |
|---|
| Protein accession | NP_744989 |
|---|
| Protein GI | 26989564 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0804] Urea amidohydrolase (urease) alpha subunit |
|---|
| TIGRFAM ID | [TIGR01792] urease, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0747373 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCATA TTTCCCGTCA GGCCTATGCC GACATGTTCG GGCCCACTGT TGGCGACCGC
GTGCGCCTGG CCGACACTGC GCTATGGGTG GAGGTCGAGA AAGACTTCAC GATCTACGGC
GAGGAGGTGA AGTTCGGCGG CGGCAAGGTC ATTCGCGATG GCATGGGGCA GGGCCAGATG
CTGGCGGCCG AGGCCATGGA CCTGGTGTTG ACCAATGCGC TGATCATCGA CCACTGGGGC
ATCGTCAAGG CCGACATCGG CATCAAGCAT GGACGCATCG CGGTGATCGG CAAGGCCGGC
AACCCCGATG TGCAGCCGGG CGTGAACGTG CCGGTCGGGC CAGGGACCGA GGTGATCGCG
GCCGAGGGCA AGATCGTCAC CGCCGGTGGT GTCGATTCGC ATATCCACTT CATTTGCCCA
CAGCAGGTGG ACGAGGCATT GAACAGCGGT GTCACCACGT TCATCGGCGG TGGAACCGGG
CCGGCCACTG GCACCAATGC CACCACCTGC ACGCCCGGCC CCTGGTACCT TGCGCGCATG
TTGCAGGCTG CCGACAGCTT GCCGATCAAC ATCGGGCTGC TGGGCAAGGG CAATGCCTCG
CGGCCAGACG CGCTGCGCGA GCAGATTGCC GCAGGCGCTG TCGGGCTCAA GCTGCATGAA
GACTGGGGCT CTACGCCAGC AGCCATCGAC TGTTGCCTGG GCGTGGCCGA GGAAATGGAT
ATCCAGGTGG CGATTCACAC CGACACCCTC AACGAGTCGG GCTGTATCGA AGACACGTTG
GCGGCCATCG GCGACCGCAC CATCCACACC TTCCATACCG AAGGTGCCGG TGGCGGCCAT
GCCCCGGACA TCATCCGTGC GGCGGGGCAG GCCAACGTGC TGCCATCCTC GACCAACCCG
ACCCTGCCTT ACACGATCAA CACCGTGGAC GAGCACCTGG ACATGCTCAT GGTCTGTCAC
CACCTGGACC CGAGCATCGC CGAGGACGTG GCCTTCGCCG AGTCACGCAT TCGCCGCGAA
ACCATCGCTG CCGAGGACAT CCTCCACGAC ATGGGCGCCT TTGCCATGAC CTCGTCCGAC
TCCCAGGCCA TGGGCCGGGT TGGCGAGGTG GTGCTGCGCA CCTGGCAGGT GGCGCACCAG
ATGAAGCTGC GTCGCGGGCC GCTGGCACCG GACACCCCGT ACAGCGACAA CTTCCGGGTC
AAGCGCTACA TCGCCAAGTA CACCATCAAC CCGGCACTCA CCCATGGCAT CGGTCACGAA
GTGGGCTCGG TGGAGGTCGG CAAGCTGGCC GACCTGGTGC TGTGGTCGCC AGCGTTCTTT
GCGGTCAAGC CGGCCCTGGT GCTCAAGGGC GGGATGATCG TCACCGCGCC CATGGGCGAC
ATCAACGGCT CCATACCCAC CCCCCAGCCG GTGCACTATC GGCCGATGTT CGGCGCGCTG
GGGGCGGCTC GGCATGCCAC ACGCATGACA TTCCTGCCCC AGGCGGCAAT GGACCGCGGG
CTGGCCGAGG AGCTGAACCT GCGCAGCCTG ATTGGCGTGG TCAACGGTTG CCGGCGGGTA
CGCAAGCCGG ACATGGTCCA CAACACCCTG CAGCCGCTGA TCGAAGTCGA TGCGCAGACC
TATCAGGTGC GTGCCGATGG CGAACTGCTG GTCTGCGAAC CGGCCAGCGA ACTGCCGCTG
GCCCAGCGCT ATTTCCTGTT CTGA
|
|---|
| Protein sequence | MSHISRQAYA DMFGPTVGDR VRLADTALWV EVEKDFTIYG EEVKFGGGKV IRDGMGQGQM
LAAEAMDLVL TNALIIDHWG IVKADIGIKH GRIAVIGKAG NPDVQPGVNV PVGPGTEVIA
AEGKIVTAGG VDSHIHFICP QQVDEALNSG VTTFIGGGTG PATGTNATTC TPGPWYLARM
LQAADSLPIN IGLLGKGNAS RPDALREQIA AGAVGLKLHE DWGSTPAAID CCLGVAEEMD
IQVAIHTDTL NESGCIEDTL AAIGDRTIHT FHTEGAGGGH APDIIRAAGQ ANVLPSSTNP
TLPYTINTVD EHLDMLMVCH HLDPSIAEDV AFAESRIRRE TIAAEDILHD MGAFAMTSSD
SQAMGRVGEV VLRTWQVAHQ MKLRRGPLAP DTPYSDNFRV KRYIAKYTIN PALTHGIGHE
VGSVEVGKLA DLVLWSPAFF AVKPALVLKG GMIVTAPMGD INGSIPTPQP VHYRPMFGAL
GAARHATRMT FLPQAAMDRG LAEELNLRSL IGVVNGCRRV RKPDMVHNTL QPLIEVDAQT
YQVRADGELL VCEPASELPL AQRYFLF
|
|---|
| |