| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2818 |
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| Symbol | mexD |
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| ID | 1042701 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 3214083 |
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| End bp | 3217211 |
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| Gene Length | 3129 bp |
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| Protein Length | 1042 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637146240 |
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| Product | multidrug efflux RND transporter MexD |
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| Protein accession | NP_744962 |
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| Protein GI | 26989537 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.231957 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCAGGT TCTTCATCCA TCGCCCGAAC TTCGCCTGGG TCGTGGCGTT GTTCATTTCA
CTGGCCGGTT TGCTGGTGAT TCCATCCTTG CCCGTGGCCC AGTACCCCAA CGTGGCGCCA
CCGCAGATCT CCATCACCGC CTCCTACCCC GGCGCTTCGG CCAAGGTCAT GGTGGAGTCG
GTGACCAGCA TCATCGAACA GTCGCTCAAC GGCGCCAAGG GCCTGCTGTA CTACGAGTCC
ACCAACAACT CCAACGGCGT GGCCGAAGTG ATGGTGACCT TCGAGCCAGG CACCGACCCG
GACATGGCGC AGGTCGACGT GCAGAACCGT TTGAAACAGG CCGAGGCACG CATGCCACAG
GCGGTGCTGA CCCAAGGGCT GAAAGTCGAG CAGGCCAGCT CCGGCTTCCT GCTGATCTAC
GCCCTGACCA GCACGGCCGG CAACCGTGGC GATACCACGG CCCTAGCCGA CTATGCCGCG
CGCAACATCA ACAACGAACT GCTGCGCGTG CCCGGCGTGG GCAAGCTGCA GTTCTTCGCC
TCGGAAGCGG CCATGCGGGT CTGGGTGGAT CCGCAGAAGC TGGTGGGCTA TGGCCTGTCC
ATCGACGACA TCAACTCGGC CATTCGCGGC CAGAACGTCC AGGTACCGGC CGGCAGCTTC
GGCAGCACGC CCGGTGCCAG CGAGCAGGAG CTGACCGCGA CCCTGGCCGT GCAGGGCACT
CTCGACACCC CGGAAGCGTT CGCCGGCATC GTCCTGCGCG CCAACCCCGA TGGCTCCAGC
GTCCGCCTGG GTGATGTGGC GCGCATGGCC ATCGGTAGCG AGAACTACAA CCTGTCGGCG
CGCCTGAACG GCCACCCGGC GGTGGCCGGT GCGGTGCAGT TGGCGCCGGG CGCCAATGCC
ATCCAGACCG CGACGCTGGT CAAGGAGCGC TTGGCCGAGC TGTCGCAGTT CTTCCCCGAA
GGTGTCGAAT ACTCGGTGCC GTACGACACC TCGCGCTTCG TCGACGTGGC CATCGAGAAG
GTGATCCACA CCCTGATCGA AGCCATGGTG CTGGTGTTCC TGGTGATGTT CCTGTTCCTG
CAGAACGTGC GCTATACCCT GGTCCCGTCG ATCGTGGTGC CGGTGTGCCT GCTCGGGACG
CTGATGATCA TGAAGCTGCT CGGCTTCTCG GTGAACATGA TGACCATGTT CGGCATGGTG
CTGGCCATCG GCATCCTGGT GGACGACGCC ATCGTGGTGG TGGAGAACGT CGAGCGGTTG
ATGGCCGAGG AAGGTCTGTC GCCGGTGGAG GCGACCATCA AGGCGATGGG GCAGGTGTCC
GGGGCGATCA TCGGCATCAC CCTGGTGCTG GCGGCGGTGT TCCTGCCGTT GGCGTTCATG
TCCGGTTCAG TGGGGGTGAT CTACCAGCAG TTCTCCGTGT CGCTGGCAGT GTCGATCCTG
TTCTCCGGCT TCCTGGCCCT GACCTTCACC CCGGCGCTGT GCGCCACGCT GCTCAAGCCG
GTGCCCCATG GCCACCATGA AAAGGCCGGT TTCTTCGGCG CCTTCAACCG TGGCTTCGCC
CGTGTCACCG AACGCTATTC GCTGCTCAAC AGCGAACTGG TGGCACGTGC CGGCCGCTGG
ATGCTGGCGT ATGTGGGCAT CCTGGTGGTG CTGGGCTATT CCTACCTGCG CTTGCCGGAG
GCCTTCGTGC CGGCCGAGGA CCTTGGCTAT AGCGTCGTGG ATGTGCAGTT GCCACCAGGC
GCCAGCCGGG TACGCACCGA CCACACCGCT GAGGCGCTGG AAAAGTTCCT GATGTCCCGT
GACGCGGTGG CCAACTCGTT CATCGTCAGC GGCTTCAGTT TCTCGGGCCA GGGTGACAAT
GCCGCATTGG CGTTCCCGAC CTTCAAGGAC TGGTCGCAGC GCGACAAGGC GCAATCGGCG
GAGGCGGAAA CGGCAGCGAT CAATGCACAG TTCGCCGCCA ACGGCGACGG TGCCATCACC
GCCGTCATGC CGCCGCCGAT CGACGGCCTG GGCAACTCCG GTGGTTTCGC CCTGCGCCTG
ATGGACCGTG GTGGCCTCGG GCGCGAAGCA CTGCTCGCGG CCCGTGACCA GTTGCTGGCG
CGTGCCAACG GCAACCCGGT GATCCTCTAC GCGATGATGG AAGGCCTGGC CGAAGCACCG
CAGCTGCGCC TGCACATCGA CCGGGAAAAG GCCCGAGCCC TGGGCGTGAG CTTCGAGGCC
ATCAACAGCA CCTTGGCCAC CGCCTTCGGA TCGGCTGTGA TCAACGACTT CACCAATGCC
GGGCGCCAAC AGCGCGTGGT GGTGCAGGCA GAGCAAGGCG AACGCATGAC CCCCGAAAGC
GTGCTGCGCC TCTATGCTCC CAATGCCAAC GGCGAGCAGG TGCCGTTCAG CGCCTTCGTC
ACCACCCAGT GGGAGGAGGG CCCGGTGCAA CTGGTGCGCT ACAACGGTTA CCCGTCGATC
CGCATCGCCG GCGACGCCTC GCCGGGGCAC AGTACCGGGC AGGCAATGGC CGAGATGGAG
CGCCTGGTCA GCGAGCTGCC GCCAGGTATC GGCTACGCCT GGACGGGCCT TTCCTACCAG
GAGAAGGTCT CCAGCGGCCA GGCTGCCAGC CTGTTCGCCC TGGCCATCCT GGTGGTGTTC
CTGCTGCTGG TGGCGCTGTA CGAAAGCTGG GCGATCCCGC TGACGGTGAT GCTGATCGTA
CCGATCGGTG CCCTGGGCGC GGTGTGGGCG GTGACGCTCA CCGGCATGCC CAACGACGTG
TACTTCAAGG TCGGCCTGAT CACCATCATT GGCCTGGCGG CGAAGAACGC CATCCTGATC
GTCGAGTTCG CCAAGGAACT GTGGGAGAAG GGCTACAGCC TGTGCGACGC CGCCATCGAG
GCCGCGCGCC TGCGTTTCCG TCCGATCGTG ATGACCTCCA TGGCGTTCAT CCTCGGCGTG
GTGCCGCTGG CCATCGCCTC CGGCGCGGGT GCGGCAAGCC AGCGCGCCAT CGGTACCGGC
GTGATCGGCG GCATGCTCAG CGCCACCTTG CTGGGCGTGG TGTTCGTGCC GGTCTGTTTT
GTCTGGGTGT TGACGTTGCT CAAGCGCAAG CCTTCCCCGG TGCAACAGGC TGTCGAGGAG
GCAGAGTGA
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| Protein sequence | MSRFFIHRPN FAWVVALFIS LAGLLVIPSL PVAQYPNVAP PQISITASYP GASAKVMVES
VTSIIEQSLN GAKGLLYYES TNNSNGVAEV MVTFEPGTDP DMAQVDVQNR LKQAEARMPQ
AVLTQGLKVE QASSGFLLIY ALTSTAGNRG DTTALADYAA RNINNELLRV PGVGKLQFFA
SEAAMRVWVD PQKLVGYGLS IDDINSAIRG QNVQVPAGSF GSTPGASEQE LTATLAVQGT
LDTPEAFAGI VLRANPDGSS VRLGDVARMA IGSENYNLSA RLNGHPAVAG AVQLAPGANA
IQTATLVKER LAELSQFFPE GVEYSVPYDT SRFVDVAIEK VIHTLIEAMV LVFLVMFLFL
QNVRYTLVPS IVVPVCLLGT LMIMKLLGFS VNMMTMFGMV LAIGILVDDA IVVVENVERL
MAEEGLSPVE ATIKAMGQVS GAIIGITLVL AAVFLPLAFM SGSVGVIYQQ FSVSLAVSIL
FSGFLALTFT PALCATLLKP VPHGHHEKAG FFGAFNRGFA RVTERYSLLN SELVARAGRW
MLAYVGILVV LGYSYLRLPE AFVPAEDLGY SVVDVQLPPG ASRVRTDHTA EALEKFLMSR
DAVANSFIVS GFSFSGQGDN AALAFPTFKD WSQRDKAQSA EAETAAINAQ FAANGDGAIT
AVMPPPIDGL GNSGGFALRL MDRGGLGREA LLAARDQLLA RANGNPVILY AMMEGLAEAP
QLRLHIDREK ARALGVSFEA INSTLATAFG SAVINDFTNA GRQQRVVVQA EQGERMTPES
VLRLYAPNAN GEQVPFSAFV TTQWEEGPVQ LVRYNGYPSI RIAGDASPGH STGQAMAEME
RLVSELPPGI GYAWTGLSYQ EKVSSGQAAS LFALAILVVF LLLVALYESW AIPLTVMLIV
PIGALGAVWA VTLTGMPNDV YFKVGLITII GLAAKNAILI VEFAKELWEK GYSLCDAAIE
AARLRFRPIV MTSMAFILGV VPLAIASGAG AASQRAIGTG VIGGMLSATL LGVVFVPVCF
VWVLTLLKRK PSPVQQAVEE AE
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