| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2790 |
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| Symbol | |
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| ID | 1043745 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 3178718 |
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| End bp | 3180670 |
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| Gene Length | 1953 bp |
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| Protein Length | 650 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637146212 |
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| Product | sigma-54 dependent sensory box protein |
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| Protein accession | NP_744934 |
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| Protein GI | 26989509 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR02329] propionate catabolism operon regulatory protein PrpR |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGCTC TTGCCTCCCA GGTCGTCGTG CTGATCAGCC ACTTGCAGCG CCCCCAACAA
CGGAGCCGGC TCGCCCATGT GGTGGCCGGG CTCACGACGG ACTACCCAGA TACTCGTATC
GAAGTCCTCG ACACCTCGGT GGCTGAAGCA CTACAGACCG CCCGAGAATT GGAGCAGGCA
GGCAAGGTCG ATGTGTTCGT CTGCGCCGGG GCGACCGCCG CCTACCTGCG CAAACACCTG
ACACGCCCGG TACTGGCGAT GCGCGTGGGC AGTGGCGACC TGCTACGGGC ATTGGGGCAG
GCCCGCGAAC GCTCCTCCCA AGTGGCCGTG CTCAGCTACA ACCATGTCAA CCACGACCTG
CAAGCCATGG CCGCGCTCTT CACCGTCCAG GTTCACCAGG CCGCCTACAC CTCCCTGGAA
GAGGCCCGCC AGGCCGTCGA ACAGGCGGCC CAGCTAGGCT GTCGCAGCAT CATCGGCTCG
TCGACGGTGG TGGAGCTGGC GGAGCAGGCA GGGCTGCATG GCGTGCTGTC GCTGAGCGAA
GACACCGCGC GCAAAGCGCT GGAGGAAGCC CTGGGCATTC TCGACACTCA ACGCGTCGAG
ATCGCCAAAC GGCGGCATCT GAATGCCGTG CTGCGGCATA TCCCCGCCGG CGTAGCAGCG
GTCGACAACC AAGGCGTGGT GCAGTCGCTC AACCCTGCCC TTGCGCAGCT GCTGGACCTG
CCGGTTAGCG CAGCGCTGGG CCGGCCGCTG CAGCAGCTGT GCCCGGAACT GGACCTGCAG
CAGGCGCTGC AGGAAGGCAC GGGTGAAGAA AACCGCGTGA TGCGGCTCGG CTCGCACGCC
GTGGTGAGCA ATTTACTGCC TATCCTGGAG AACGGCGAAC GTACCGGCCT GGTCCTGACC
TGCCAGGACA TCACTGTTGT GCAACGTGCC GACCAACGCA TCCGATCCAC CCGCCGCCCT
GGTGCGTTCA CTGCCCGTTA CCGGCTCGAC CAGCTCAACG GCAACAGCAA GGCCAACCGC
GAGATGCTGC AGTTGGCCAA GCGTTTTGCC ACCAGCCATT CGACCATCCT GATTACCGGT
GAAAGCGGCA CCGGCAAGGA ACTGCTCGCC CAGGGAATCC ATAACGAAAG CCCGCGCCGG
CAAGGCCCCT TCGTCGCCAT CAACTGCGCG GCGTTTCCCG AGTCGTTGCT GGAAAGTGAA
TTGTTCGGCT ACGAGGAAGG CGCCTTCAGC GGCTCGCGCA AAGGTGGCAA GCCAGGCCTG
TTCGAAGCAG CACACCGCGG CACGCTGTTC CTCGACGAGA TCGGCGACAT GCCGGTGTCG
CTGCAAACAC GCCTGCTGCG CGTGCTGCAA GAGCGCGAAG TCCTGCGCCT GGGCAGCACC
GAACCGATTG CCATCGACGT GCGCATCATT GCCGCCACCC ACAAGGACCT GCGCAGCGCC
ATGGACGATG GCGATTTCCG TACCGACCTG TATTTCCGGC TCAACATCCT GCGTCTGCAG
ACCACCCCGC TGCGAGAGCG CCCTGAGGAC ATTGCCCTGA TCTGCCGGGG CATCAGCCAG
CGCCTGCTCG TTCAGGGGCA ACCACCGGGA GCTGCAGACA TCCCCGCCGC GCTGCTGCCG
TACCTTGAAC GCTATGCCTG GCCGGGCAAT GTCCGGGAAC TGGAGAATGT GATCGAGCGC
GCGATGCTCT CGGCACGCGA ACTGCTTGAG GAACACCGCG TGAACGAGCA GTACCTAGCA
CGCGTGCTAC CTGAACTGTG CGAAGGCCCT CCCCCTTCAC CCGCCCGGAA AAAGTCGTCA
GGCGAAACGG ACCTGCACAC CATCGGCAAG GTCGCGCAAC TGCGCCATGT AAAGGAAACG
TTGGAAAGCT GCCGCGGCAA CCTCGACGAA GCCGCCCGCC GTCTCGGCAT CAGCCGCACA
ACCTTGTGGC GGCGCTTGCG ATCTGCCAAT TGA
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| Protein sequence | MDALASQVVV LISHLQRPQQ RSRLAHVVAG LTTDYPDTRI EVLDTSVAEA LQTARELEQA
GKVDVFVCAG ATAAYLRKHL TRPVLAMRVG SGDLLRALGQ ARERSSQVAV LSYNHVNHDL
QAMAALFTVQ VHQAAYTSLE EARQAVEQAA QLGCRSIIGS STVVELAEQA GLHGVLSLSE
DTARKALEEA LGILDTQRVE IAKRRHLNAV LRHIPAGVAA VDNQGVVQSL NPALAQLLDL
PVSAALGRPL QQLCPELDLQ QALQEGTGEE NRVMRLGSHA VVSNLLPILE NGERTGLVLT
CQDITVVQRA DQRIRSTRRP GAFTARYRLD QLNGNSKANR EMLQLAKRFA TSHSTILITG
ESGTGKELLA QGIHNESPRR QGPFVAINCA AFPESLLESE LFGYEEGAFS GSRKGGKPGL
FEAAHRGTLF LDEIGDMPVS LQTRLLRVLQ EREVLRLGST EPIAIDVRII AATHKDLRSA
MDDGDFRTDL YFRLNILRLQ TTPLRERPED IALICRGISQ RLLVQGQPPG AADIPAALLP
YLERYAWPGN VRELENVIER AMLSARELLE EHRVNEQYLA RVLPELCEGP PPSPARKKSS
GETDLHTIGK VAQLRHVKET LESCRGNLDE AARRLGISRT TLWRRLRSAN
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