Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_2627 |
Symbol | |
ID | 1046016 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 3003417 |
End bp | 3007037 |
Gene Length | 3621 bp |
Protein Length | 1206 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637146049 |
Product | hypothetical protein |
Protein accession | NP_744771 |
Protein GI | 26989346 |
COG category | [S] Function unknown |
COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCAAA TATGGACGCA ACTCAAACGT TGGGGCTGGC CGTGGGTAAC GCGCATTGGC CTGGCGCTGC CGCTGCTGCT CGGGCTTGGC GCCTTGCTGA TGCTGGTCGC CATCTGGTGG CTTGGCCCGC AATGGACGTG GCGTGAGCAG CAGCCGCTGG CAAGTGTGGC TCATCGCAGC GTGGCAAGCC TGGTGCTGGT GCTGGTGCCG CTTCTGTGCT GGCTTGGGGT GCTGCGCACG CGCTTTCGCC GCCTGCAAGC GGAGCGCCGC CAGGCACTGG CCGCCGAACA GGATGTCGCG CTACCATTCG TGCAGGCGCA AGAGCGGGCC TTGAGCCAGG GGCTTGAGCG GTACCTCGAC AATGCCGGTG GGCGACGCGC GTTGTACCGG CTGCCCTGGT ACCTGGTGTT GGGCGACGAA CAGTCCGGTA AAAGCAGCTT CATCGACCGC ACCGATCAGC GCTTTACCCT GACGCGTATC GACCAGGCCC AGGCACGGGG CCGACAGACT CAAGCAATGG CCTACCCGGT AGGCTGGTGG GTCAGCGACG ATGCCGTGAT CATCGACCCG CCCGGTGTTT TCATCAGTCA AAAACCACCG GTGGGCTCGG CGGCCAACGC CCCCTCCGAA GCCTCCGCGC CGCCCGGCAT CCAGGCCCGG TTATGGGAGC ACCTGTTGGG CTGGCTGCAG CGTAAGCGAA GCCAGCGGGC GCTCAATGGA GTGTTGCTGG TGGTCGACCT GCCGGCGTTG CTGCATGGCA GGCCCGAGCA GCGCGTCGCG CTGGCCCATG GGTTGCGCAC ACGCCTGTAC GAAGTGAGCA GTCAGTTGGG GGCGCGCCTG CCGCTGTACG TGGTACTGAC CAAATTCGAT CTGCTGGACG GCTTCGACCA GTTCTACAGC CAGCTTCCGG CCGCCAAGCG TAAAAGCCTG TTGGGGTTCA CCTTCAAGCT GGATGCGGTT GACGCGTTCG ACGCCTGGCT GGATGAGTAT GACGAGCACT ACGGGCGGCT TCTCACCCAA TTGCAGGAGC AGGTCATCGA CCGGCTGGAT GTACTGGGCA AGACAGCGCC GTGCGGGCGC CTGTTCTCAC TGCATGCACA GTTGATCGGG TTGCGCCCCA TACTGCAGGC ATTCCTGCGC GAAACCTTGG CGAGTGACCG GTTCACCACG CCACCCTTGG TACGTGGTGT GTACTGGTCG TCAGTGGTAC AGCAAGGCGA CATGCGCAAT GCCTTTGTCC GAGAAGCGGC TCAGCCCTAC ACGACGAAGC TGCCCCTGCG TGAAGGTAAG GCACAGGGGA AGGCGTTGGT CTATTTCATC CAGCAAGCAT TCAGGCGGGT TATCTATCAG GAAGCCGGGC TGGCGGGTGA CAATGTTCGG GTTGCGCGCA GCAAGCGCCA CTTGCTGTGG GTGGGCTCTG GTGTAGGCAT CCTGGCGTTC AGTATCGCCG TTGCCAGCTG GCAGCGTTAC GCCGACATCA ATGGCGCCAA GGCTGCCAGT GTGCTCGCCA AAAGCCAGGA GTACAGCGGT CACGAAGTCG ATATGCGTCT TGATCCGACC GGGCGCAACC TGCTGGCGCC ACTGGACCAG ATTCGCGATG CGGTCGCGGT GTTTGGCGAC TATCGTGCGG CCTGGCCGGT GGTTGCCGAT TTTGGCTTGT ATCAAGGGCG CAACATTGGT CCCTTGGTTG ATGAGGCGTA CCTCAGCTTG TTGTCTAAAC GTTTCTTGCC GGCCTTGGCC AGTGGTGTGA TCGATGCCAT GAACGCAGCA CCACCTGGCA GCGAGCAACA AATGGCCGCG CTCAGGGTTT ACCGGATGAT CGAGGACCGC AACAGCCGCC GGCCCGAATG GGTCGAGGAC TGGATGGCCC GTCAGTGGCA ACGGGCCTTT CCTGGCCAGG GGCAGTTGCA GCGTGACCTC ATGCAGCACC TGAAATACGC CTTGGCCTAT GCCGATACCG ATTTGCCGCA GTACCGCCAG CGGGTCAGCG AAGTGCAGCA GGCGCTGCGC AAATTGCCGT TGCCACAGCG GGTCTATGCA GGGCTGAAAC AACAATCGTA CCAGCAGTTG CACGCCGGGC TGGACCTGCG CCACCAGGTA GGGCCTGCGT TCGATGTGGT GTACCAGCCG TCTTCCGGGG CCAGGCAAGG GGATGAGGAT GTACGGCTGG CCGCCATGCT CACCGCCAAA GGCTTCAGGG AATACTTCGA GCCGCACAGC CAACGCTTCG CTGAAATGGC GATGGTTGAT CAATGGGCAT TGGGGGAGCG CAGTCAACTC GACTATTCGG ACGTCGACCG CGATGCGCTG ACCGAGCGGC TGTATAACCT CTACAGCGCC GATTACATTG ACAGCTGGCG GCGCGCCCTG ACCGCTTTTA CGGTGGCTGA CTTCCGTGAT CTGGACCATG GTGTCGCGAT CCTGGAGCAG TTGACCGGCC CCGCAGCACC ATTGCAACGG CTGCTGGATA CGGTCAGGGA TAACACCTCG CTTGCGCCTC CAGCAGCTGT TGAAGCATCG GGTGAGCTGA GTACGCTGCG CGTAGCAACC GGAAAACCCG AGCAACAGCA AGCGTTGGCC ATCCAGCGGG CGTTTGCAGG CCTTGGCGCC ATGCTGCAGG CGACAGGAGA AAAGCCGAGC TACTACGATG AAACCCTTGG CGCTGTTGCG GCCGTGCTGG ACTACGCCAA GGCCGTACAG GACAGCCCGG ACCGCGGCAA GGCTGCTTTG CAGGCCGTGC ATCAGCGCTT TGCGATGACA GGGCAGGACC CGATAGGCAC CCTCCAACGT ATTGCCACAG GTTTACCGGA GCCTATCAGC CACCAGGTCA GAAAGCTCGC CGACCAGACT GCCCAGGTGC TGAACGTTGA AGCACTGCGC GAACTGGAGC GACGTTGGGA TGCTGACGTG TACAGTTTTT TCCAGCAACG CCTGGCAGGC CGCTACCCCT TTGTGGTGAA GGCACCCGAT GCTTCTTTGG ATGACTTCGA GGCGTTCTTC GGGCCGAAAG GGCGCCTGCA GCAGTTTAAT GATCGGTATC TCAAGGTTTT CCTGAAGGAC AACCTTGAGG CCTTGCAGTC CGCTCAGCAC GGGCAATCCC TGATTCGTGC CGACGTGATC GAGCAGCTCG AGCTGGCGGA GCGCATCCGC GAAACCTTCT TCGATCAGCG TGGCAAGCTA AGTGTGCAGT TCAGCATCGA GCCCTTGGGG CTCAGTGCAA ACCAGCGTAC CAGCCTGCTG GACCTGGATG GCCAGTTGAT TGCCTACACC CATGGGCCAA GCCATATCAC GGGTATTGTC TGGCCCAATA CCTTGGGGCA GCAGGTCCGC AGCAATCTCA CCTTGCTAAG GCAAAATGGC AACAGCAGCA GCCTGGAGTA CCGTGGCCCG TGGTCGATGT TCCGCTTGCT CAGCCGCGGT GCGCTCAATG GCCGGACGGC GACCAGCGTG GACCTGAGCT TCAGGACCGG AGATGGCGTG ATGCGCTATC GGCTTAACGC TGAAAAAGCC TTCAATCCCA TTACCCAGCA ACCTTTCAAA GGCTTCCGCT TGCCCCGAGG CTTGTTGCAA CAGCCAGCCA GTGTGGTGCA GGCGGTGCTA CCGGATGGGC AGCGACTATG A
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Protein sequence | MNQIWTQLKR WGWPWVTRIG LALPLLLGLG ALLMLVAIWW LGPQWTWREQ QPLASVAHRS VASLVLVLVP LLCWLGVLRT RFRRLQAERR QALAAEQDVA LPFVQAQERA LSQGLERYLD NAGGRRALYR LPWYLVLGDE QSGKSSFIDR TDQRFTLTRI DQAQARGRQT QAMAYPVGWW VSDDAVIIDP PGVFISQKPP VGSAANAPSE ASAPPGIQAR LWEHLLGWLQ RKRSQRALNG VLLVVDLPAL LHGRPEQRVA LAHGLRTRLY EVSSQLGARL PLYVVLTKFD LLDGFDQFYS QLPAAKRKSL LGFTFKLDAV DAFDAWLDEY DEHYGRLLTQ LQEQVIDRLD VLGKTAPCGR LFSLHAQLIG LRPILQAFLR ETLASDRFTT PPLVRGVYWS SVVQQGDMRN AFVREAAQPY TTKLPLREGK AQGKALVYFI QQAFRRVIYQ EAGLAGDNVR VARSKRHLLW VGSGVGILAF SIAVASWQRY ADINGAKAAS VLAKSQEYSG HEVDMRLDPT GRNLLAPLDQ IRDAVAVFGD YRAAWPVVAD FGLYQGRNIG PLVDEAYLSL LSKRFLPALA SGVIDAMNAA PPGSEQQMAA LRVYRMIEDR NSRRPEWVED WMARQWQRAF PGQGQLQRDL MQHLKYALAY ADTDLPQYRQ RVSEVQQALR KLPLPQRVYA GLKQQSYQQL HAGLDLRHQV GPAFDVVYQP SSGARQGDED VRLAAMLTAK GFREYFEPHS QRFAEMAMVD QWALGERSQL DYSDVDRDAL TERLYNLYSA DYIDSWRRAL TAFTVADFRD LDHGVAILEQ LTGPAAPLQR LLDTVRDNTS LAPPAAVEAS GELSTLRVAT GKPEQQQALA IQRAFAGLGA MLQATGEKPS YYDETLGAVA AVLDYAKAVQ DSPDRGKAAL QAVHQRFAMT GQDPIGTLQR IATGLPEPIS HQVRKLADQT AQVLNVEALR ELERRWDADV YSFFQQRLAG RYPFVVKAPD ASLDDFEAFF GPKGRLQQFN DRYLKVFLKD NLEALQSAQH GQSLIRADVI EQLELAERIR ETFFDQRGKL SVQFSIEPLG LSANQRTSLL DLDGQLIAYT HGPSHITGIV WPNTLGQQVR SNLTLLRQNG NSSSLEYRGP WSMFRLLSRG ALNGRTATSV DLSFRTGDGV MRYRLNAEKA FNPITQQPFK GFRLPRGLLQ QPASVVQAVL PDGQRL
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