| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2624 |
|---|
| Symbol | |
|---|
| ID | 1046013 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 3000489 |
|---|
| End bp | 3000992 |
|---|
| Gene Length | 504 bp |
|---|
| Protein Length | 167 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637146046 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_744768 |
|---|
| Protein GI | 26989343 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3516] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03358] type VI secretion protein, VC_A0107 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.799752 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAAAA ATACGGGATC CGTTGCGCCG AAAGAACGCG TCAATATCAA GTATGTCCCC
GCTACCAGCG ATGAGCAGGC TGAGGTGGAG CTGCCGCACA AGATGCTGGT GCTGGGCGAC
TTCGGCCTGG ATGACAGCCG TGCGCTTGAG GACCGTCAGG TCATGCGCAT CGATAAACAT
ACATTCAACA GCGTGTTGAA CGACGCCAAT GTGAGCCTGG ACGTGACGGT ACCGTCCAGG
CTCGGCACCG CCCCGGATAC CGAGCTGGCC GTCCACCTGC AGTTCAGGTC CATCAACGAT
TTCGGGCCGG ACCGGATCGC GCGCCAGGTG CCCGAGCTGA ACAAGCTGCT GGCGCTGCGC
GAAGCACTGG TCGCCCTGAA AGGCCCGCTG GGCAACGTCC CGGCCTTCCG CAAGCAATTG
CAGCACCTGC TTAACAACGA GCAGGCGCGT AAGCAGCTCG CCCAAGAACT GGACCTGGTG
CTCGAGGCGC CAGAAAAAGA TTGA
|
|---|
| Protein sequence | MSKNTGSVAP KERVNIKYVP ATSDEQAEVE LPHKMLVLGD FGLDDSRALE DRQVMRIDKH
TFNSVLNDAN VSLDVTVPSR LGTAPDTELA VHLQFRSIND FGPDRIARQV PELNKLLALR
EALVALKGPL GNVPAFRKQL QHLLNNEQAR KQLAQELDLV LEAPEKD
|
|---|
| |