| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2608 |
|---|
| Symbol | |
|---|
| ID | 1045996 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 2982366 |
|---|
| End bp | 2983175 |
|---|
| Gene Length | 810 bp |
|---|
| Protein Length | 269 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637146030 |
|---|
| Product | shikimate dehydrogenase family protein |
|---|
| Protein accession | NP_744752 |
|---|
| Protein GI | 26989327 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0159253 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTCGAG GTTCCACTGA ACTGGTCGCC ATCGTCGGTT CGCCCATCGC CCAGGTGAAG
TCCCCGCAAA ACTTCAACAC CTGGTTCAAC CACAACAACT GCAACCTCGC CATGCTGCCC
ATCGACCTGC ACGAGGCGGC GCTGGACAGC TTTGCGGATA CCCTGCGTGG CTGGCAGAAC
CTGCGCGGTT GCGTGGTCAC CGTGCCTTAC AAGCAGGCGC TGGCCAACCG CGTGGACGGC
CTGAGCGAGC GCGCGGCTGC CCTGGGCTCG ATCAATGTGA TACGTCGCGA GCGCGACGGA
CGCCTGCTGG GCGACAATGT GGACGGCGCC GGCTTCCTCG GCGCTGCGCA CAAGCATGGC
TTCGAGCCGG CGGGCAAACG GGCACTGGTG ATCGGTTGCG GCGGTGTTGG CAGTGCCATT
GCCTATGCAC TGGCTGAGGC AGGGATCGCC AGCATAACCC TCTGCGACCC CAGCACCGCA
CGCATGGGTG CGGTATGCGA ACTGCTCGGC AACGGCTTCC CCGGGCTTAC GGTCAGCACA
CAGTTCAGTG GGCTGGAAGA CTTCGACCTG GTGGCCAACG CGTCCCCAGT CGGCATGGGC
ACCCGCGCAG AGCTGCCGTT GTCCGCCGCC CTGCTGGCTA CCCTGCAGCC AGACACCCTG
GTCGCCGACG TGGTCACCTC ACCCGAGATC ACCCCGCTGC TGAACCGCGC GCGGCAAGTA
GGTTGCAGGA TCCAGACTGG CCCGGAAATG GCCTTCGCCC AACTGGGCCA CCTTGGCGCC
TTCATGGGCG TCACACCGTT GGAGATCTGA
|
|---|
| Protein sequence | MIRGSTELVA IVGSPIAQVK SPQNFNTWFN HNNCNLAMLP IDLHEAALDS FADTLRGWQN
LRGCVVTVPY KQALANRVDG LSERAAALGS INVIRRERDG RLLGDNVDGA GFLGAAHKHG
FEPAGKRALV IGCGGVGSAI AYALAEAGIA SITLCDPSTA RMGAVCELLG NGFPGLTVST
QFSGLEDFDL VANASPVGMG TRAELPLSAA LLATLQPDTL VADVVTSPEI TPLLNRARQV
GCRIQTGPEM AFAQLGHLGA FMGVTPLEI
|
|---|
| |