| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2560 |
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| Symbol | |
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| ID | 1045926 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 2908698 |
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| End bp | 2910434 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637145983 |
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| Product | type I secretion system ATPase |
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| Protein accession | NP_744705 |
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| Protein GI | 26989280 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.11254 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTAAGC CACCACGCAC CCGCTCCGAA CTGGCCGACG TGCTGTTTCA CTTGCGCCGC
AGCTTCTACG CCCTAGCCGC CTTCAGCGGC GTGATAAACG TCATGATGTT GACGCCAGCC
ATTTATATGT TGCAGGTGTA TGACCGCGCC CTGGTCAGCC GCAACGTCAC CACCTTAGGC
ATGCTCACCT TGCTGGTGGT CGGCCTGTTC CTGCTGATGT CGGCGCTGGA GATGGTTCGC
ACCCGGGTGT TGATAAGGGT GGGCAACGGC CTGGACATGA GCCTGAACCG GCGCATCTTC
AGCGCTGCCT TCGAACGCAA CCTCAGCCGT GCCGGCGGTA ACCCGGCCCA GGCCCTGCAG
GACTTGGCGC AGGTACGGCA GTTTCTCACC GGTAACGGCC TGTTCGCGTT CTTCGACGCC
CCCTGGACAC CGATCTACCT GCTGGTTTGC TACCTGATCC ACCCGTGGCT CGGGCTGGTC
ACCACGATTG GCTCGCTGAT CCTCGTCGGC CTGGCCTACC TCACTGAAAA GGCCACGCAA
AAACCCTTGG CCGAAGCCAA CCAGGCAGCC ATGTCGTCGG CCAGTTACGC CAACAACAAC
CTGCGCAACG CCGAAGTGAT CGAAGCCATG GGCATGCTGC CGTCAATCGG CAAGCGCTGG
TATCAGGGCC ACTTGCGTAT CCTGCAGATG CAGACCCTGG CCTCCGACCG CGCGGCGCTG
ATCAGCAGCA TCGGGCGCTT CGTGCGCATC ACCCTGCAGT CGCTGATCCT CGGCACCGGC
GCGCTGCTGG CGATAGAGGG CACGATCACC CCCGGCATGA TGATCGCCTG CTCGATCCTT
ACCGGCCGAG CCCTAGGCCC GGTGGAACAG GTGATTGCTG CGTGGAAGCA ACTGCTGGGC
TGCCGCCTGG CCTGGGGCAG ACTCAATGAC CTGCTGCAGG ACTACCCGCA ACGGCCACCG
AGCATGTCGC TGCAGCGGCC AATGGGCATG CTGGCCGTGG AGAACGTGAT CGCCGGCGCC
CCAGGCAGCA GCACCAGCAT CGTACGCGGG GTGAGCTTCA GCCTGGCCCC GGGTGACAGC
CTGGGTGTCA TCGGCCCCTC GGCCTCGGGC AAGTCTACCC TCGCCCGCCT GTTGGTAGGC
GTGTGGCCGG CCCAGGCCGG CAAGGTGCGC CTGGACGGCG CCGATATCTT CACCTGGAAC
AAGGCCGAAC TGGGCCCGTG GCTGGGCTAC CTGCCGCAGG ACGTGGAGCT GTTCGAAGGC
ACCATCGCCG AAAACATCGC CCGCTTTGCC GAGGTGGACA GCGACGCGGT GATCCGTGCC
GCCCGCAGCA GCGGTGTACA CGACATGATC CTGCGCTTCC CGCAGGGTTA CGACACCCGC
CTGGCCGCCG ATGGCAGCCC ATTGTCTGGC GGCCAGAAGC AACGCATCGC GCTGGCCCGC
GCCCTGTATG GCGAGCCCAA CCTGGTGGTG CTGGACGAAC CCAACGCCAA CCTCGATGAC
GTGGGTGAAA AAGCCTTGGT CGATGCCCTT GCCGAGCTCA AGGCACGCGG CGCCACGGTG
GTGCTGATTT CCCACCGGCC CAATGTGCTG TGCGCGGTCG ATCAGATACT GATGCTGCGC
GACGGGGGTG TGCACATGCT TGGCAGCCGC GACGAAGTGT TCGCCGCGCT GCGCAAGGCC
GCGGTGATTC CGGCAACGGC TGCGGCACCG CTGGCTTCGG TCAAAGTACG GGAGTAA
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| Protein sequence | MPKPPRTRSE LADVLFHLRR SFYALAAFSG VINVMMLTPA IYMLQVYDRA LVSRNVTTLG
MLTLLVVGLF LLMSALEMVR TRVLIRVGNG LDMSLNRRIF SAAFERNLSR AGGNPAQALQ
DLAQVRQFLT GNGLFAFFDA PWTPIYLLVC YLIHPWLGLV TTIGSLILVG LAYLTEKATQ
KPLAEANQAA MSSASYANNN LRNAEVIEAM GMLPSIGKRW YQGHLRILQM QTLASDRAAL
ISSIGRFVRI TLQSLILGTG ALLAIEGTIT PGMMIACSIL TGRALGPVEQ VIAAWKQLLG
CRLAWGRLND LLQDYPQRPP SMSLQRPMGM LAVENVIAGA PGSSTSIVRG VSFSLAPGDS
LGVIGPSASG KSTLARLLVG VWPAQAGKVR LDGADIFTWN KAELGPWLGY LPQDVELFEG
TIAENIARFA EVDSDAVIRA ARSSGVHDMI LRFPQGYDTR LAADGSPLSG GQKQRIALAR
ALYGEPNLVV LDEPNANLDD VGEKALVDAL AELKARGATV VLISHRPNVL CAVDQILMLR
DGGVHMLGSR DEVFAALRKA AVIPATAAAP LASVKVRE
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