Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_2547 |
Symbol | |
ID | 1045832 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 2891895 |
End bp | 2892764 |
Gene Length | 870 bp |
Protein Length | 289 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637145970 |
Product | LysR family transcriptional regulator |
Protein accession | NP_744692 |
Protein GI | 26989267 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | [TIGR03339] aminoethylphosphonate catabolism associated LysR family transcriptional regulator |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.291089 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00703073 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGTCGGTTT CCCACGCTCA ACTCAAGGCT TTCCACGCGG TGGCCGTGCA CGGCAGCTTT ACCCGCGCCG CTGAAAGGCT GTTTCTTACC CAGCCTGCGG TGTCCGACCA GGTACGCAAA CTGGAGGAGC GCTTCGGCGT ATTGCTGTTC CACCGCAACA AACGCTCGGT GCAGCTCACC GACCTTGGCG AGCGGCTGCT GGGCATCAGC CAGCGCCTGT TCGCCTGCGA GGCCGAAGCC CAGGAACTGC TGCACGACTC GCGTGCGCTG CAGACCGGCA GCCTGGTGCT GGCAGTGGAT GCGCCGGTGC ACGTGCTGCC GCAGATCGCC CGCTTCTGCC AGCGCTATCC AGGCATCCAG GTGAAGATCG AAACCGGCAA TACCGACGAA TCGCTGGCGC GGCTGTTCAG CTATCAGGCC GACCTGGCCC TGCTGGGGCG CGATGTCGAC GATGAGCGCC TGCATTGCCT GCCGCTGCGT CGTGACCCGA TGGTGGCGTT CGTTTCCCAC AACCACCCAT GGGCCAGCCG TGGCTCGATC AGCCTGGCCG ACCTGGACGA CACGCCACTG GTGCTGCGCG AGCCCGGCTC GGTGACGCGG CAGACGCTGG AGGAAGAGAT GCAACGTGCC GGCCTGCGGA TACGCGCAGC GATCCAGGTG GAAGGCCGGG AAGCGGCGCG TGAAGCGGTG GTGGTAGGCA TTGGCGTGGG CGTGGTGTCG GCGGCGGAGT TCGGTGCCGA TGCGCGGGTG TGTGCATTGC CGATCGTCGA TTGCCAGCGG CATTTGACCG AGACCCTGGT GTGCCTGAGC GAGCAGCGTA CGCGCCGGGT GGTGGCGACT TTCCTGCAGA TGGTCGAGGA AGGGGTGTAG
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Protein sequence | MSVSHAQLKA FHAVAVHGSF TRAAERLFLT QPAVSDQVRK LEERFGVLLF HRNKRSVQLT DLGERLLGIS QRLFACEAEA QELLHDSRAL QTGSLVLAVD APVHVLPQIA RFCQRYPGIQ VKIETGNTDE SLARLFSYQA DLALLGRDVD DERLHCLPLR RDPMVAFVSH NHPWASRGSI SLADLDDTPL VLREPGSVTR QTLEEEMQRA GLRIRAAIQV EGREAAREAV VVGIGVGVVS AAEFGADARV CALPIVDCQR HLTETLVCLS EQRTRRVVAT FLQMVEEGV
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