| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2338 |
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| Symbol | prpD |
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| ID | 1045337 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 2668146 |
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| End bp | 2669630 |
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| Gene Length | 1485 bp |
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| Protein Length | 494 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637145761 |
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| Product | 2-methylcitrate dehydratase |
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| Protein accession | NP_744487 |
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| Protein GI | 26989062 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2079] Uncharacterized protein involved in propionate catabolism |
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| TIGRFAM ID | [TIGR02330] 2-methylcitrate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000387778 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCGCCA ACGTAGACCT CAACGATCGC CCGGATTACG ACCGGGTGCT ACAAACCCTG
GCCGATTACG CCCTCGGCTA CCGGGTCGAT TCCCGCGAGG CCCTGGACAC CGCGCGCAAC
TGCCTGATGG ACACCCTCGG TTGCGGCCTT CTCGCCTTGC GCTTCCCTGA GTGCACCAAG
CTCCTTGGCC CCCAGGTGGA AGGCACGCTG GTCCCGAATG GTGCTCGCGT CCCCGGCACC
TCCTATCGCC TCGACCCGGT CAAGGCTGCC TGGGACATTG GCTGCACGGT GCGCTGGCTG
GACTACAACG ACACCTGGCT GGCCGCCGAA TGGGCTCATC CCTCGGACAA CCTTGGCGGC
ATCCTGGCAG TGGCTGACCA CCTGTCACAG AAACGGGTTG CCGCGGGTGA AAAGCCACTG
CTGATGCGTG ATGTGCTCGA GGCGATGGTC ATGGCGCATG AGATCCAGGG CGTGCTGGCG
CTGGAAAACG CCTTCAACCG TGTCGGCCTC GATCACGTGA TTCTGGTGAA GGTCGCCTCG
ACCGCCGTGT GCGCCAGGCT GATGGGGGCC AATCGTGAGC AGATGCTCTC GGCCTTGTCC
CACGCCTTCG TCGACGGCCA GGCCCTTCGT ACCTATCGCC ATGCGCCCAA CGCCGGTTCG
CGCAAGTCCT GGGCTGCGGG TGACGCCTCC AGCCGAGGTG TGCGCCTGGC CGACATCGCC
TTGCGTGGGG AAATGGGCGT GCCGGGCGTG CTCACGGCGT CGCAGTGGGG GTTCTACGAT
GTTTCGTTCA GCCATACCAA CAAAGACCTG GCGCTCAAGC CCGCTGGGCA GTACGAGCTG
CGCCTGCCCC AGGCGTTGGG CAGCTATGTG ATGGAGAACG TGCTGTTCAA GGTCAGTTTC
CCTGCCGAGT TTCATGCGCA GACCGCCTGT GAGGCAGCAG TAACCCTGCA TCCACTTGTG
CGTAACCGTC TGCATGAAGT CGACCGCATC GTCATCACCA CCCAGGAATC AGCGATCCGC
ATCATCTCCA AGAGCGGCCC ACTGGCCAAT GCCGCCGACC GTGACCACTG TCTGCAGTAC
ATGGTGGCCG TGCCGCTGAT CTTTGGTCAT CTGGTGGCGG AGCATTATGA GGACGCCTTC
CATGCCAACC ACCCCAGTAT CGACCGCCTG CGCGAGAAGA TGGAGGTGGT GGAAGACCCG
CGCTTCAGTC GCGAGTACCT GGAGCCGGGC AAGCGTTCGA TCGCCAACGC GCTGCAGGTG
TTCTTCAAGG ATGGCAGCAG CACCGAGCAA GTGGTGGTGG AGTACCCGAT CGGGCATCGT
CGGCGGCGCG GGGAGGGGAT ACCGTTGCTG GAGGCCAAGT TCAGGGCCAA CCTGGCGACC
CGCTTTGCCC GGCAGCGGTG TCAGCAGGTT TTCGAACTGT GCAAGGACCA GCAGAAGCTG
GAAGGCACGG CTGTGCACAG GTTCGTGGAC TTGTTTGTGA TATGA
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| Protein sequence | MSANVDLNDR PDYDRVLQTL ADYALGYRVD SREALDTARN CLMDTLGCGL LALRFPECTK
LLGPQVEGTL VPNGARVPGT SYRLDPVKAA WDIGCTVRWL DYNDTWLAAE WAHPSDNLGG
ILAVADHLSQ KRVAAGEKPL LMRDVLEAMV MAHEIQGVLA LENAFNRVGL DHVILVKVAS
TAVCARLMGA NREQMLSALS HAFVDGQALR TYRHAPNAGS RKSWAAGDAS SRGVRLADIA
LRGEMGVPGV LTASQWGFYD VSFSHTNKDL ALKPAGQYEL RLPQALGSYV MENVLFKVSF
PAEFHAQTAC EAAVTLHPLV RNRLHEVDRI VITTQESAIR IISKSGPLAN AADRDHCLQY
MVAVPLIFGH LVAEHYEDAF HANHPSIDRL REKMEVVEDP RFSREYLEPG KRSIANALQV
FFKDGSSTEQ VVVEYPIGHR RRRGEGIPLL EAKFRANLAT RFARQRCQQV FELCKDQQKL
EGTAVHRFVD LFVI
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