| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2258 |
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| Symbol | |
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| ID | 1045151 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 2574821 |
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| End bp | 2576509 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637145677 |
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| Product | sensory box protein |
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| Protein accession | NP_744407 |
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| Protein GI | 26988982 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.202787 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0243284 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGATA ACTATCGCGC GGCCGTGGAC GCGGCCGCGA TCTTTTCGGA AACCGACCTG
CGTGGGAACA TCACCTACGT CAATCAGCAG TTCTGCAGCA TCTCGGGCTA CAGCCGTGAG
GAACTGCTGG GGGCCAACCA CCGCATCCTC AATTCCGGGC TGCATGAACC GACGTTTTTT
GTCGGCATGT GGCGGGCTTT GGTCGCCGGG CGGGTGTGGA AGGGCGAAAT CTGCAACCGG
TCCAAGGACG GTTCGTTGTA CTGGGTCGAC AGCACCATGG TGCCACTGGT CGATCCGCTG
ACAGGCCAGG TGCGCAAGTA TGTGTCGATC CGCTTTGACG TCACGGAGAA GCGCCAGCTG
CTGCATACCT TGCAGTGGCG GGTGGGCCAC GATGTGCTCA CCGGCCTGCC TAACCGCGCC
TACCTGTCCG ACCTGCTGAA CCAGGCCCTG GCCTACTCGC GCTGCGAAGG CATCTCGCTG
GCGGTGTGCA TGCTCGACCT GGATGGTTTC AAGGCGGTCA ACGACGGCTA CGGGCATGCC
GTGGGTGACC TGCTGCTGGT GGAAGTGGCG CAGCGCTTGA AGAGCATCCT GCGCGGTGGT
GATGCCGTGG CCCGGCTGTC GGGCGACGAA TTCGTGCTGA TCCTGCGCGA CGTCGACGAT
GAGCACCAGC TGCATGCAGC CCTGCAGCGG GTATTGCGTG CCTTGGCAGC GCCCTGTGTA
GTGCGTGAGC ATACGCTGTC GCTCAGCGCC AGTATCGGCG TGACCCTGTA CCCGCAGGAT
GACGAAGATG CCGACACCCT GGTGCGCCAC GCCGACCAGG CCATGTATGT GGCCAAGCAG
CGCGGGCGCA ACCGTTACCA CCTGTTCGAC GTGTCGCAGG AACAGGAACT CAAGGCCACC
CACCAGACCG TGGCGCGCGT GCGCCGGGCG CTGCGCAACG GTGAGCTGTG CCTTTACTAC
CAGCCCAAGG TCAACCTGCG CACTGGCAAG GTACTGGGCT TCGAGGGCTT ATTGCGCTGG
CAGCGGCCAG GCCGTGGTGT GGTGCCGCCA GGCGATTTCC TGCCCTGGGT AGAGCAGACC
GACCTGATCG TCGAAATCGG CGAGTGGGTG ATCGGGCAGG CGTTGAGCCA GTTGCAGGCC
TGGCAGCGCC AAGGGCAGCC CTGGTCGCTG AGCGTGAATA TTGCCGCGCG GCATTTGCAG
CGCAGTGACT TTGCCGAGCG CCTGCAGCAG CTGCTGGCAG CGTACCCGGC GGTGGACCCG
GCGCTGCTGG ACCTGGAAAT CGTCGAGTCG GTGGCCATCG ACAACCTGCA GCATGTCAGC
CGCTGCCTGG ATGCCTGCCG TGCGCTGGGT GTGCGTTTCT CGCTGGACGA TTTCGGCACC
GGTTATTCGT CCTTGAGTTA CCTGAAACGC TTGCCGACCC AGACGATCAA GATCGACCAG
TCGTTCGTGC GTGACATCCT TCATGACCAG GACGACCTGG CGCTGACGGA GGCAGTGATC
GGCCTGGCGC GAGCGTTTGG CCGCGAGGTG ATTGCCGAGG GGCTGGAGAG TGTCGAGCAC
GGTCGGGTAC TGATGGGCCT GGGCTGCGAG CTGGCGCAGG GTTACTGCAT CGCCCGGCCG
ATGCCCGCCA GTGACGTGCA AGCCTGGGCA CAGGCCTACC AGCAGCCAGT GCAGTGGCGT
GACCCTTGA
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| Protein sequence | MDDNYRAAVD AAAIFSETDL RGNITYVNQQ FCSISGYSRE ELLGANHRIL NSGLHEPTFF
VGMWRALVAG RVWKGEICNR SKDGSLYWVD STMVPLVDPL TGQVRKYVSI RFDVTEKRQL
LHTLQWRVGH DVLTGLPNRA YLSDLLNQAL AYSRCEGISL AVCMLDLDGF KAVNDGYGHA
VGDLLLVEVA QRLKSILRGG DAVARLSGDE FVLILRDVDD EHQLHAALQR VLRALAAPCV
VREHTLSLSA SIGVTLYPQD DEDADTLVRH ADQAMYVAKQ RGRNRYHLFD VSQEQELKAT
HQTVARVRRA LRNGELCLYY QPKVNLRTGK VLGFEGLLRW QRPGRGVVPP GDFLPWVEQT
DLIVEIGEWV IGQALSQLQA WQRQGQPWSL SVNIAARHLQ RSDFAERLQQ LLAAYPAVDP
ALLDLEIVES VAIDNLQHVS RCLDACRALG VRFSLDDFGT GYSSLSYLKR LPTQTIKIDQ
SFVRDILHDQ DDLALTEAVI GLARAFGREV IAEGLESVEH GRVLMGLGCE LAQGYCIARP
MPASDVQAWA QAYQQPVQWR DP
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