| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2144 |
|---|
| Symbol | |
|---|
| ID | 1044999 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 2445724 |
|---|
| End bp | 2446431 |
|---|
| Gene Length | 708 bp |
|---|
| Protein Length | 235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637145558 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | NP_744293 |
|---|
| Protein GI | 26988868 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0903799 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCAAT CGGAAACCGT TGAACGCATT CTCGACGCTG CCGAGCAGCT GTTCGCGGAA
AGGGGGTTCG CCGAAACCTC GTTGCGGCTG ATTACCAGCA AGGCCGGGGT CAACCTGGCG
GCAGTCAACT ATCATTTCGG CTCCAAGAAG GCGCTGATCC AGGCCGTTTT CTCGCGTTTC
CTTGGCCCAT TCTGCGCCAG TCTGGAGCGT GAGCTGGAGC GCCGCCAGGC CAAGCCGGAG
CACAAGCCCA GCCTCGAAGA ACTGCTGGAA ATGCTCGTAG AGCAGGCGCT GGCCGTGCAG
CCGCGCAGCA ACAACGACCT GTCGATCTTC ATGCGCCTGC TGGGCCTGGC GTTCAGCCAG
AGCCAGGGTC ACCTGCGGCG CTATCTGGAA GACATGTACG GCAAGGTGTT CCGCCGCTAC
ATGCTGCTGG TGAACGAGGC TGCGCCACGC ATTCCGCCAC TGGAACTGTT CTGGCGTGTG
CACTTCATGC TGGGTGCCGC GGCCTTCAGC ATGTCCGGTA TCAAGGCCCT GCGGGCGATT
GCCGAGACCG ACTTCGGCAT CAACACCTCG ATCGAGCAGG TGATGCGCCT GATGGTGCCG
TTCCTGGCGG CAGGCATGCG CGCTGACAGC GGTGTGACCG ACGAGGCGAT GGCCACTGCG
CAGCTGCGCC CGCGCACAAA GACCGGTTCG GCTACCGCCA AGGCCTGA
|
|---|
| Protein sequence | MAQSETVERI LDAAEQLFAE RGFAETSLRL ITSKAGVNLA AVNYHFGSKK ALIQAVFSRF
LGPFCASLER ELERRQAKPE HKPSLEELLE MLVEQALAVQ PRSNNDLSIF MRLLGLAFSQ
SQGHLRRYLE DMYGKVFRRY MLLVNEAAPR IPPLELFWRV HFMLGAAAFS MSGIKALRAI
AETDFGINTS IEQVMRLMVP FLAAGMRADS GVTDEAMATA QLRPRTKTGS ATAKA
|
|---|
| |