| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2139 |
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| Symbol | topA |
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| ID | 1044994 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 2440860 |
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| End bp | 2443469 |
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| Gene Length | 2610 bp |
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| Protein Length | 869 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637145553 |
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| Product | DNA topoisomerase I |
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| Protein accession | NP_744288 |
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| Protein GI | 26988863 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.124713 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCAAAT CGCTGGTCAT TGTGGAATCC CCGGCCAAGG CCAAGACCAT CAACAAGTAC
CTGGGCAACC AGTACGTGGT GAAGTCGAGT ATCGGCCATA TCCGAGACCT CCCCACCAGC
GGTTCGGCCA GCGCGAGCAA AGAGCCGGCC GCCAAGCGTG GCAAGGCTGC GGGTGAGGCG
CCGGCGCTTT CGCCGAAAGA GAAGGCCCGC CGCCAGCTGG TGGCACGCAT GGGCGTCGAC
CCCGACCATG GCTGGAAGGC CAAGTACGAG ATCCTGCCTG GCAAGGAAAA GGTGATCGAA
GAGCTGCGCC GCCTGGCCAA GGATGCCGAC ACCATCTACC TCGCAACCGA CTTGGACCGC
GAAGGGGAAG CCATTGCCTG GCACCTGCGC GAGGCCATCG GGGGTGACGA CACCCGCTAC
AAGCGCGTGG TGTTCAACGA AATTACCAAG AAGGCCATTC AGGAAGCCTT CTCGCAGCCA
GGCGAGCTGG ACATCGACCG GGTCAATGCC CAGCAGGCGC GGCGTTTCCT CGACCGCGTG
GTCGGTTACA TGGTTTCGCC ACTGCTGTGG GCCAAGATTG CCCGTGGTCT GTCCGCTGGC
CGTGTACAGT CGGTGGCGGT GAAGCTGGTG GTTGAGCGTG AGCGTGAGAT CCGCGCCTTC
ATCCCGGAAG AGTACTGGGA GATCCACGCC GACCTCGGCA CCGCCAAGAA CGCCAAGGTG
CGTTTCGAGG TGGCGCGCGA GAAGGGCGAG GCCTTCAAGC CGCTGAACGA AGCTCAGGCC
ATGGCTGCAC TGGAAAAGCT CAAGGCTTCC AGTTACAGCG TGGTCAAGCG CGAAGACCGT
CCGACCAGCA GCAAGCCATC GGCACCGTTC ATTACGTCCA CCTTGCAGCA AGCGGCCAGT
AACCGCCTGG GCTTCGGTGT GAAGAAAACC ATGATGATGG CCCAGCGCTT GTACGAAGCC
GGTTACATCA CCTACATGCG TACCGACTCG ACCAACCTGT CGGCTGACGC CCTGGATATG
GCACGCAGCT ACATCGAACG GGAGTTCGGC AAGCAGTACC TGCCGGAGGC GCCACTGGTT
TACGGCAGCA AGGAGGGCGC CCAGGAGGCG CACGAAGCGA TTCGGCCTTC TGACGTGAAT
ACCCACCCGA CCAAGCTCAG CGGCATGGAG CGTGACGCCG AGCGCCTGTA CGAGCTGATC
TGGCGCCAGT TCCTGGCGTG CCAGATGCCG CCAGCGCAGT ACCTGTCCAC CAGCGTTACC
GTCGCTGCCG GCGATTTCGA GCTGCGCGCC AAGGGCCGCA TCCTCAAGTT CGACGGTTAC
ACCCGTGTGC TGCCGCAGCA GAGCAAGCCG GGCGAAGACG ACGTGCTGCC AGAGATGGTG
CAGGGTGAAG CACTCAAGCT GATCCAGATC GACCCGAGCC AGCACTTTAC CAAGCCACCT
GCACGCTTTA CCGAAGCCAG CCTGGTCAAG GAAATGGAAA AGCGCGGTAT TGGCCGCCCA
TCGACCTACG CGGCGATCAT TTCCACCATC CAGGACCGTG GCTATGTGAC GCTGCACAAC
CGTCGCTTCT ACTCCGAGAA GATGGGCGAC ATCGTCACCG AGCGTTTGTC GGAGAGCTTC
TCCAACCTGA TGGACTACGG CTTTACCGCC GACATGGAAG AGAACCTCGA CGACGTCGCC
CAGGGCGAGC GTGACTGGAA GAACGTGCTC GACGAGTTCT ACGGCGATTT CAGCAAAAAG
CTGCAGACTG CCGAGTCCAG CGAAGACGGC ATGCGTGCCA ACCAGCCGAC CATGACCAAC
ATTCCGTGCA AGGAATGTGG TCGGCCGATG ATGATTCGCA CCGCTTCTAC GGGTGTGTTC
CTGGGTTGCT CTGGCTACAG CCTGCCGCCG AAAGAGCGCT GCAAGGCTAC CGTCAACCTG
GTGCCGGGCG ACGAGATTGC CGCTGACGAC GAGGGCGAGT CGGAATCGCG CGTGTTGCTG
GGCAAGCACC GTTGCCCGAT CTGCGCCACG GCGATGGACG CCTACCTGCT GGACGAGAAA
CACAAGCTGC ACATCTGCGG TAACAACCCG GATTGTGTCG GTTACGAGAT CGAAGAAGGC
AACTACCGCA TCAAGGGTTA CGAAGGGCCG AGCCTGGAGT GCGACAAGTG CGGTAGCGAG
ATGCAATTGA AGACCGGCCG TTTCGGCAAG TTCTTCGGCT GCACCAACCC GGCGTGCAAG
AACACCCGCA AGCTGCTCAA GAGCGGCGAG GCGGCGCCAC CGAAGATGGA CAAGGTGGAC
ATGCCGGAGC TCAAGTGCGA GAAGGTCGAC GATACCTACG TGCTGCGCGA CGGTGCTTCC
GGGTTGTTCC TGGCTGCCAG CCAGTTCCCC AAGAACCGCG AAACCCGTGC GCCGCTGGTG
CTGGAGATTG TGCCGCACAA GCATGAGATC GACCCGAAGT ACCACTTCCT GTGCGATGCG
CCGCAGAAAG ACCCGGATGG CCGCCCGGCG GTGATCCGCT ACAGCCGCAA GACCAAGGAG
CAGTATGTGC AGTCCGAGGT CGATGGCAAG CCGACCGGCT GGAAGGCATT CTACGACGGC
AATGCCTGGA AGGTTGAAGA TAAGCGCTGA
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| Protein sequence | MGKSLVIVES PAKAKTINKY LGNQYVVKSS IGHIRDLPTS GSASASKEPA AKRGKAAGEA
PALSPKEKAR RQLVARMGVD PDHGWKAKYE ILPGKEKVIE ELRRLAKDAD TIYLATDLDR
EGEAIAWHLR EAIGGDDTRY KRVVFNEITK KAIQEAFSQP GELDIDRVNA QQARRFLDRV
VGYMVSPLLW AKIARGLSAG RVQSVAVKLV VEREREIRAF IPEEYWEIHA DLGTAKNAKV
RFEVAREKGE AFKPLNEAQA MAALEKLKAS SYSVVKREDR PTSSKPSAPF ITSTLQQAAS
NRLGFGVKKT MMMAQRLYEA GYITYMRTDS TNLSADALDM ARSYIEREFG KQYLPEAPLV
YGSKEGAQEA HEAIRPSDVN THPTKLSGME RDAERLYELI WRQFLACQMP PAQYLSTSVT
VAAGDFELRA KGRILKFDGY TRVLPQQSKP GEDDVLPEMV QGEALKLIQI DPSQHFTKPP
ARFTEASLVK EMEKRGIGRP STYAAIISTI QDRGYVTLHN RRFYSEKMGD IVTERLSESF
SNLMDYGFTA DMEENLDDVA QGERDWKNVL DEFYGDFSKK LQTAESSEDG MRANQPTMTN
IPCKECGRPM MIRTASTGVF LGCSGYSLPP KERCKATVNL VPGDEIAADD EGESESRVLL
GKHRCPICAT AMDAYLLDEK HKLHICGNNP DCVGYEIEEG NYRIKGYEGP SLECDKCGSE
MQLKTGRFGK FFGCTNPACK NTRKLLKSGE AAPPKMDKVD MPELKCEKVD DTYVLRDGAS
GLFLAASQFP KNRETRAPLV LEIVPHKHEI DPKYHFLCDA PQKDPDGRPA VIRYSRKTKE
QYVQSEVDGK PTGWKAFYDG NAWKVEDKR
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