Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_2130 |
Symbol | |
ID | 1044983 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 2429980 |
End bp | 2431953 |
Gene Length | 1974 bp |
Protein Length | 657 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637145544 |
Product | soluble lytic transglycosylase, putative |
Protein accession | NP_744279 |
Protein GI | 26988854 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.224048 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCTGGCTC CGCCGACACT TCCCATGGTT CAACTGCCCG GACGTATCAT GCGCAGCCGC CTGTTACATA TCGCATCCTG CCTGCTGCTT ACCGCTGCCA CCTGCGCAGC GCAGGCCACC GACCTGACCC TGCAACGCCA GTACTATGAC GAGGCCAAGC GAGCGCTGGC CAAAGGCGAC AAAGGCCCGT ACCTGCGCTA TGCCCAGGCC TTGAGCGACT ACCCGCTGAC GCCCTACCTG GCCTACGACG AACTCACCGC CCGCCTGAAG AGTGCCAGCA ACCAGGAAAT CGAAGGTTTC CTGGCCAAGC ATGGCGACCT GCCCCAGGCC AACTGGATGA AACTGCGCTG GTTGCGCTGG CTGGCAGAAC GCGGCGAGTG GGATACGTTC GTCAAGTACT ACGACCCCAA GCTCAACTTC ACCGAACTGG ACTGCCTCAA CGGCCAATAC CAGCTCAGCC ACGGCCTGCG CGCCGAAGGT TACGCCACCG CCGACAAGCT GTGGAACGTC GGCAAATCGC AACCTGCCGC CTGCGACACA CTGTTCGGCA TGTGGGCAGC CGAAGGCCAG CTGACCGAGG CCAAGCGCTG GGAACGCACC AAGCTGGCCG CCCAGGCGCG CAACTACGGC CTGGCCAACA CCCTGGTCAA GACCCTGACC ACCCTCGGCC CGCAGGGGCG CCTGCTGATC GACGTCGCGC AGAAGCCCGA GCTGCTCAAC CAGCCGTCGC GCTTTACCCC GGTCAACGAG GCCATGTCCG ACGTGGTCAG CCTCGGCCTT CGTCGCCTGG CCCGGCAGAA CCCGGAGCGG GCCATGGCAC TGCTCGACGA TTACGCCCAG CGCATGCACT TCTCGGGTGA CGAAAAAGTG GCCATCGCCC GCGAAATCGG CCTGACCCTC GCACGCCGCT ACGACCCACG CGCGCTCGAC CTGATGACCC GCTATGACCC CCAGCTGCGC GACAACACCG TCAGCGAATG GCGCCTTCGC CTGCTGCTGC GCCTGGGCCG CTGGGAGGAC GCCTACGAGT TGACCAAGCG CCTTCCCCAG GACCTGGCCA GCACCAGCCG CTGGAAGTAC TGGCAGGCTC GCAGCCTGGA GCTGGCACAG CCAAACAACC CGCAGGTCCC GCTTCTTTAC AAGGCCGCAG CGCGTGAGCG TGACTTCTAT GGCTTCCTCG CCGCCGACCG GGCACAGACA CCGTACCAGC TGAACAACAA GCCGCTGCTG CTGAGCCCAC AACTGGTCAA GAAGGTTCGC AACACGCCCG GCATCCAGCG CGCACTGGAA TTCCACGCCC GCGGCCAGAT CGTCGACGGC CGCCGTGAGT GGTACCACGT CAGCCGCCAC TTCACCCGTG ACGAGATGGT TGCGCAGGCA CGCCTGGGCT ATGAGCTGCG TTGGTACTTC CCGGCTATCC GCACCATCAG CCAGGCCCGG TACTGGGACG ACCTGGACAT CCGCTTCCCC ATGGCCCACC GCGACACGCT GGTGCGTGAA GCCAAGGTTC GCGGCCTGCA TTCGAGCTGG GTATTCGCCA TCACTCGCCA GGAAAGCGCC TTCATGGAGG ACGCACGCTC ACCCGTGGGC GCCAGCGGCC TGATGCAGCT GATGCCGGCC ACCGCCAAGG AAACCGCACG CAAGTTCAGC ATCCCGCTGG CCTCACCGGC GCAAGTGCTG AACCCGGACA AGAACATCCA GCTGGGTGCG GCCTACCTGA GCCAGGTACA CAGCCAGTTC AACGGCAACC GGGTGCTGGC TTCGGCAGCC TACAACGCCG GGCCCGGGCG CGTGCGACAG TGGCTCAAAG GGGCCAAGCA CCTGAGCTTC GATGTGTGGG TGGAGTCGAT CCCGTTCGAC GAAACGCGCC AGTATGTACA GAACGTGCTG TCGTATTCGG TGATCTACGG GCAGAAGCTG AATTCACCGC AGCCATTGGT GGATTGGCAT GAACGGTATT TCGATGACAT GTGA
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Protein sequence | MLAPPTLPMV QLPGRIMRSR LLHIASCLLL TAATCAAQAT DLTLQRQYYD EAKRALAKGD KGPYLRYAQA LSDYPLTPYL AYDELTARLK SASNQEIEGF LAKHGDLPQA NWMKLRWLRW LAERGEWDTF VKYYDPKLNF TELDCLNGQY QLSHGLRAEG YATADKLWNV GKSQPAACDT LFGMWAAEGQ LTEAKRWERT KLAAQARNYG LANTLVKTLT TLGPQGRLLI DVAQKPELLN QPSRFTPVNE AMSDVVSLGL RRLARQNPER AMALLDDYAQ RMHFSGDEKV AIAREIGLTL ARRYDPRALD LMTRYDPQLR DNTVSEWRLR LLLRLGRWED AYELTKRLPQ DLASTSRWKY WQARSLELAQ PNNPQVPLLY KAAARERDFY GFLAADRAQT PYQLNNKPLL LSPQLVKKVR NTPGIQRALE FHARGQIVDG RREWYHVSRH FTRDEMVAQA RLGYELRWYF PAIRTISQAR YWDDLDIRFP MAHRDTLVRE AKVRGLHSSW VFAITRQESA FMEDARSPVG ASGLMQLMPA TAKETARKFS IPLASPAQVL NPDKNIQLGA AYLSQVHSQF NGNRVLASAA YNAGPGRVRQ WLKGAKHLSF DVWVESIPFD ETRQYVQNVL SYSVIYGQKL NSPQPLVDWH ERYFDDM
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