Gene PP_2130 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_2130 
Symbol 
ID1044983 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp2429980 
End bp2431953 
Gene Length1974 bp 
Protein Length657 aa 
Translation table11 
GC content64% 
IMG OID637145544 
Productsoluble lytic transglycosylase, putative 
Protein accessionNP_744279 
Protein GI26988854 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.224048 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTGGCTC CGCCGACACT TCCCATGGTT CAACTGCCCG GACGTATCAT GCGCAGCCGC 
CTGTTACATA TCGCATCCTG CCTGCTGCTT ACCGCTGCCA CCTGCGCAGC GCAGGCCACC
GACCTGACCC TGCAACGCCA GTACTATGAC GAGGCCAAGC GAGCGCTGGC CAAAGGCGAC
AAAGGCCCGT ACCTGCGCTA TGCCCAGGCC TTGAGCGACT ACCCGCTGAC GCCCTACCTG
GCCTACGACG AACTCACCGC CCGCCTGAAG AGTGCCAGCA ACCAGGAAAT CGAAGGTTTC
CTGGCCAAGC ATGGCGACCT GCCCCAGGCC AACTGGATGA AACTGCGCTG GTTGCGCTGG
CTGGCAGAAC GCGGCGAGTG GGATACGTTC GTCAAGTACT ACGACCCCAA GCTCAACTTC
ACCGAACTGG ACTGCCTCAA CGGCCAATAC CAGCTCAGCC ACGGCCTGCG CGCCGAAGGT
TACGCCACCG CCGACAAGCT GTGGAACGTC GGCAAATCGC AACCTGCCGC CTGCGACACA
CTGTTCGGCA TGTGGGCAGC CGAAGGCCAG CTGACCGAGG CCAAGCGCTG GGAACGCACC
AAGCTGGCCG CCCAGGCGCG CAACTACGGC CTGGCCAACA CCCTGGTCAA GACCCTGACC
ACCCTCGGCC CGCAGGGGCG CCTGCTGATC GACGTCGCGC AGAAGCCCGA GCTGCTCAAC
CAGCCGTCGC GCTTTACCCC GGTCAACGAG GCCATGTCCG ACGTGGTCAG CCTCGGCCTT
CGTCGCCTGG CCCGGCAGAA CCCGGAGCGG GCCATGGCAC TGCTCGACGA TTACGCCCAG
CGCATGCACT TCTCGGGTGA CGAAAAAGTG GCCATCGCCC GCGAAATCGG CCTGACCCTC
GCACGCCGCT ACGACCCACG CGCGCTCGAC CTGATGACCC GCTATGACCC CCAGCTGCGC
GACAACACCG TCAGCGAATG GCGCCTTCGC CTGCTGCTGC GCCTGGGCCG CTGGGAGGAC
GCCTACGAGT TGACCAAGCG CCTTCCCCAG GACCTGGCCA GCACCAGCCG CTGGAAGTAC
TGGCAGGCTC GCAGCCTGGA GCTGGCACAG CCAAACAACC CGCAGGTCCC GCTTCTTTAC
AAGGCCGCAG CGCGTGAGCG TGACTTCTAT GGCTTCCTCG CCGCCGACCG GGCACAGACA
CCGTACCAGC TGAACAACAA GCCGCTGCTG CTGAGCCCAC AACTGGTCAA GAAGGTTCGC
AACACGCCCG GCATCCAGCG CGCACTGGAA TTCCACGCCC GCGGCCAGAT CGTCGACGGC
CGCCGTGAGT GGTACCACGT CAGCCGCCAC TTCACCCGTG ACGAGATGGT TGCGCAGGCA
CGCCTGGGCT ATGAGCTGCG TTGGTACTTC CCGGCTATCC GCACCATCAG CCAGGCCCGG
TACTGGGACG ACCTGGACAT CCGCTTCCCC ATGGCCCACC GCGACACGCT GGTGCGTGAA
GCCAAGGTTC GCGGCCTGCA TTCGAGCTGG GTATTCGCCA TCACTCGCCA GGAAAGCGCC
TTCATGGAGG ACGCACGCTC ACCCGTGGGC GCCAGCGGCC TGATGCAGCT GATGCCGGCC
ACCGCCAAGG AAACCGCACG CAAGTTCAGC ATCCCGCTGG CCTCACCGGC GCAAGTGCTG
AACCCGGACA AGAACATCCA GCTGGGTGCG GCCTACCTGA GCCAGGTACA CAGCCAGTTC
AACGGCAACC GGGTGCTGGC TTCGGCAGCC TACAACGCCG GGCCCGGGCG CGTGCGACAG
TGGCTCAAAG GGGCCAAGCA CCTGAGCTTC GATGTGTGGG TGGAGTCGAT CCCGTTCGAC
GAAACGCGCC AGTATGTACA GAACGTGCTG TCGTATTCGG TGATCTACGG GCAGAAGCTG
AATTCACCGC AGCCATTGGT GGATTGGCAT GAACGGTATT TCGATGACAT GTGA
 
Protein sequence
MLAPPTLPMV QLPGRIMRSR LLHIASCLLL TAATCAAQAT DLTLQRQYYD EAKRALAKGD 
KGPYLRYAQA LSDYPLTPYL AYDELTARLK SASNQEIEGF LAKHGDLPQA NWMKLRWLRW
LAERGEWDTF VKYYDPKLNF TELDCLNGQY QLSHGLRAEG YATADKLWNV GKSQPAACDT
LFGMWAAEGQ LTEAKRWERT KLAAQARNYG LANTLVKTLT TLGPQGRLLI DVAQKPELLN
QPSRFTPVNE AMSDVVSLGL RRLARQNPER AMALLDDYAQ RMHFSGDEKV AIAREIGLTL
ARRYDPRALD LMTRYDPQLR DNTVSEWRLR LLLRLGRWED AYELTKRLPQ DLASTSRWKY
WQARSLELAQ PNNPQVPLLY KAAARERDFY GFLAADRAQT PYQLNNKPLL LSPQLVKKVR
NTPGIQRALE FHARGQIVDG RREWYHVSRH FTRDEMVAQA RLGYELRWYF PAIRTISQAR
YWDDLDIRFP MAHRDTLVRE AKVRGLHSSW VFAITRQESA FMEDARSPVG ASGLMQLMPA
TAKETARKFS IPLASPAQVL NPDKNIQLGA AYLSQVHSQF NGNRVLASAA YNAGPGRVRQ
WLKGAKHLSF DVWVESIPFD ETRQYVQNVL SYSVIYGQKL NSPQPLVDWH ERYFDDM