Gene PP_2100 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_2100 
Symbol 
ID1044952 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp2396018 
End bp2399653 
Gene Length3636 bp 
Protein Length1211 aa 
Translation table11 
GC content64% 
IMG OID637145514 
Producttwo-component sensor protein 
Protein accessionNP_744250 
Protein GI26988825 
COG category[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase
[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.349009 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.142111 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGTCATGG CCCGAGTTAT CAATCGCCTG CTGCTCGTCC TGCTGCTCAG CGGCGCGACA 
CAGGCTGGCC ATCGCGAAGC CGCGTCCTTT ACGCTACTGG CGCGCTCATC GGCCCGCCCC
GTCCAGCCCG TGCTCACGCC CGAACAACGG CAATGGCGCG AAGGCCGGCA GGAACTGGTG
CTGGGCACGT CGGCACCCGA CTATCCACCG TTCGACATCA CCGGTGGCGG CAACGACTAC
CAGGGCCTGA CCGCCGAGTA TGCAAACCTG ATCGGCAAGG CCTTGCAGTT GCCAGTGAGG
GTGCTGCGTT TCTCCAGCCG GCAGGCGGCG GTGGAGGCGC TCAGGCACGG TGATATCGAC
CTGCTGGGCA GCGCCAATGG CTACGAAGCG GCCAGTGACG GCCTGGCACT GTCGCGCCCC
TATGCCGTCG ACCAACCTGT ACTGGTAACG CGTGAAGACG AAAACCGGGC ACTGGACACG
GACCTTGCCG GCATGCGCCT GGGCATGCTC TACCACTATT TGCCCAGACA GGAAGTACTC
ACCGCCTACC CCAAGGCCGA GCTGCTGGCC TTCGGTTCTT CCAGCCAGGC ACTGAATGCT
GTCGCGTTCG GGCAGGCCGA CGTGTTCATC GGCGATACCA TCTCCACACA CTACCAGCTC
AACCGTGGTC ATCTGCCCCG CCTGCGCATG GCCAACTTCG GCAAACACGA GGCCATCGGC
TTCGGTTTTG CCTTGCGTCA GCAAGATACC GTGCTGCTGG ACCTGGTGAA CACCATCCTG
GACAGGCAAA GCCCGGCCAT TCGCTCCAGT ATCTTCAAAC GCTGGAGCGC CGGCAGCGAC
CTGTTGCTGA GCGATCGCCA ACTGCAATTG AGCGCGGCCG AGCAGCAGTG GCTGGAGAAG
CACCCCGTGA TGCGCGTGGC AGCCGATGAC GCGGCTGCAC CACTGTCCTA CTTCGATGAT
TCGGGACATT TCCGAGGCAT CACCGCCGAC CTGCTGGAAC TCATTCGCCT GCGCACCGGG
TTGCGTTTCG AAGTGCAGCG CGCCAGTGGC ATTGCCGACA TGGTCGCTCG CCTCAAGGAT
GGCCGGGCCG ATGTCATCGC CGCACTGGCC AGCGCCGGCA AAGCAGGGGA CGACCTGCAA
ATCAGCCGCC CCTACCTCGA AAGCGCCTAT GTGCTGGTCA ACCACAAGGA CAACAACGCA
TTGAGTTCAC TGGAGCAGTT GCAGGGGCAT CGCATCGCCA TTACCCGCTA CAGCACCATG
AACGCCATGC TGTCCCGGGA CTACCCAAAG ATAAGCTGGG TCGAAACCGA AAGCGCGTTC
TACTCCATGG CGTTGCTCAA CAGCGGGGCT GTCGATGCGG TGATCACCAC CCTGATCGAC
GCCAATCACG CCCTGGCCAG CAACCCAGAA CTGGTCATCC GCACCTCGGT CGGCAGCGAA
CCCGCCAACT TCGCCATGGC CACCATTGCC CCGTCACCGG CGCTGTTGTC GATCCTCGAC
AAAGCTTTGC TGAGCATCTC ACCGGAAGAG CTGGGGGTAA TCAACAACCG CTGGCGTGGC
TTTGGCAGGC ATGAGGATGA CAACTCCAAA GGCTACAGCC GCCTGGCCCT GCAGGTGGTG
CTGGCCACGG CCGTGCTTTT GTTGCTGGCC CTGCTCTGGA ATGCCCGCCT GCGCCTGCAG
ATTCGCCAGC GCCAGCGCGC CGAACGCGCG CTGAACGACC AGTTGGCATT CATGCGCGCC
CTGCTCAACG GTACGCCCCA CCCCATGTAT GTGCGCGACC GCGAGGGTTG CCTGAAAAGT
TGCAACTACA GCTACCTTGA AGCCGTGCAG GCCCGCTCCG ATCAGGTGAT CGGCAAAAAA
CTCAAGGACA GCCTGTTTGC CGATTCCGAG CAGGCTCGGC AGATCCAGGC GGATTACCAG
AAAGTCATGG CGGCGGGCTC ACCACTGATC AAGGACCGTC CATTACGGAT CAAGGGCCGG
GACCTGACCA TCTACCACTG GATCCTGCCG TACCGCGACT CCCTGGGTGA GGTGCAGGGG
ATCATCGGCG GCTGGATCGA CATCAGCGAA CGCCGCCAAC TGGTCCTGGA GCTGCGCCAG
GCCAAGCAGC AGGCCGACGA TGCCAACCGC GCCAAGAGCA CGTTCCTGGC GACCATCAGC
CACGAAATCC GCACCCCGAT GAATGCCGTG ATCGGCATGC TGGAACTGGC GGTCAAGCGC
GCCGACCAGG GCCGGGTGGA CCGCAGCGCG CTGGAACTGG CACACCATTC GGCCAAAGAC
CTGCTAGGCC TGATCGGTGA CATTCTCGAC ATCGTGCGCA TCGAGTCCGG GCACTTGTCC
CTGGCCCCGG AGGTGGTCGA CCTGGCGGCG CTGGTCGAAT CGGTGGCGCG CATTTTCGAT
GGTCAGGCGC GGCAGAAAGG CCTGGCCCTG GAGGTGCAGA TCGCCCCGGC CGCACGCTGC
CATGTCCTGC TTGACCCGCT GCGCTTCAAG CAGGTGCTGT CCAACCTGGT GAGCAATGCC
ATCAAGTTCA CCGAGCACGG TCAGGTGCGC ATCAGCGTCA GGCTGCTGGA TGACGGAACC
AGCACACCAG CCGTACTGGA GCTGGAGGTG CGCGACAGTG GCATCGGCAT CCACCCCGAC
GACCTGCAGC GCCTGTTCAA CCCGTTCATC CAGGCCAACC CGCACAGCCA GGGCGCCCGC
GCCGGTACCG GGCTGGGCCT GGCCATCTGC CGCAACCTGT GCGAAATGAT GGGCGGCAGC
CTGTCCATGA AGAGCCTGGA GGATGTCGGT ACCCAGGTGC GCCTGAAGAT GCCGCTGCAA
CGGGTGGATG GCGCAGAGCA GCCCAAACCG CTGCCCGAGC AGCTCGACGT GCCCGACCCA
CGGCTGAACG TGCTGGTCAT CGATGATCAC CCTGCCAACC TGCAACTGAT GGCGCAACAA
CTTGGCTACC TGGGCCTGGA GCACGCCAGC GCCCGCGATG GGCAGGAAGG CCTGGCGACC
TGGCGGGAAG GCGACTTCGA TGTGCTGGTA CTCGACTGCA ACATGCCGCA CATGAACGGT
TACCAGCTGG CGACTGCCGT GCGCGCCGAA GAACGCCATG GCAAGCGACC ACCCTGCACC
ATCCTCGGCT ATACCGCCAA CGCACAGCCG GAAGTACGCC GCAAGTGCCT GACCGCCGGC
ATGGACGACT GTCTGCTCAA GCCCATCAGC CTGAGCACCC TCAGCCAGCG CCTGGCTGGC
ATTCGCCCGC GCCGCCAGCA ACGCCCCCGA CGCAAGCTGT ACCAGCTGGA CGGCCTGGCC
GCCGTGGTCG GGCCTGACCC GGTTGACCGT CAGCGCTTCC TGGAAACCTT GCACCAGAGC
CTTCAGGCCG ACCTGGCCAG CCTGATGGCG CTTCACCCGC AACACGACAG CGGCGCCATT
GCCGAGCAGG CCCACAAGGT GCTCAGCGCC GCGCGCATGC TGGAAGCCCC TGACCTGATG
GCGGCCTGTG AAGCCCTCGA GGCCAGCGAC TTGCCCACTG CCCAGGTGCG CCTGCGGCGC
CAGGCACTGG CACGGCATAT GTGCCGAGTG GAACGTGCCC TGGCCAAGGA ATTGGCCACA
AGCACGGATA CTCAGGCAGG CAACCACACG TGTTAA
 
Protein sequence
MVMARVINRL LLVLLLSGAT QAGHREAASF TLLARSSARP VQPVLTPEQR QWREGRQELV 
LGTSAPDYPP FDITGGGNDY QGLTAEYANL IGKALQLPVR VLRFSSRQAA VEALRHGDID
LLGSANGYEA ASDGLALSRP YAVDQPVLVT REDENRALDT DLAGMRLGML YHYLPRQEVL
TAYPKAELLA FGSSSQALNA VAFGQADVFI GDTISTHYQL NRGHLPRLRM ANFGKHEAIG
FGFALRQQDT VLLDLVNTIL DRQSPAIRSS IFKRWSAGSD LLLSDRQLQL SAAEQQWLEK
HPVMRVAADD AAAPLSYFDD SGHFRGITAD LLELIRLRTG LRFEVQRASG IADMVARLKD
GRADVIAALA SAGKAGDDLQ ISRPYLESAY VLVNHKDNNA LSSLEQLQGH RIAITRYSTM
NAMLSRDYPK ISWVETESAF YSMALLNSGA VDAVITTLID ANHALASNPE LVIRTSVGSE
PANFAMATIA PSPALLSILD KALLSISPEE LGVINNRWRG FGRHEDDNSK GYSRLALQVV
LATAVLLLLA LLWNARLRLQ IRQRQRAERA LNDQLAFMRA LLNGTPHPMY VRDREGCLKS
CNYSYLEAVQ ARSDQVIGKK LKDSLFADSE QARQIQADYQ KVMAAGSPLI KDRPLRIKGR
DLTIYHWILP YRDSLGEVQG IIGGWIDISE RRQLVLELRQ AKQQADDANR AKSTFLATIS
HEIRTPMNAV IGMLELAVKR ADQGRVDRSA LELAHHSAKD LLGLIGDILD IVRIESGHLS
LAPEVVDLAA LVESVARIFD GQARQKGLAL EVQIAPAARC HVLLDPLRFK QVLSNLVSNA
IKFTEHGQVR ISVRLLDDGT STPAVLELEV RDSGIGIHPD DLQRLFNPFI QANPHSQGAR
AGTGLGLAIC RNLCEMMGGS LSMKSLEDVG TQVRLKMPLQ RVDGAEQPKP LPEQLDVPDP
RLNVLVIDDH PANLQLMAQQ LGYLGLEHAS ARDGQEGLAT WREGDFDVLV LDCNMPHMNG
YQLATAVRAE ERHGKRPPCT ILGYTANAQP EVRRKCLTAG MDDCLLKPIS LSTLSQRLAG
IRPRRQQRPR RKLYQLDGLA AVVGPDPVDR QRFLETLHQS LQADLASLMA LHPQHDSGAI
AEQAHKVLSA ARMLEAPDLM AACEALEASD LPTAQVRLRR QALARHMCRV ERALAKELAT
STDTQAGNHT C