| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2098 |
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| Symbol | dacB |
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| ID | 1044950 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 2393977 |
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| End bp | 2395389 |
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| Gene Length | 1413 bp |
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| Protein Length | 470 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637145512 |
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| Product | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase |
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| Protein accession | NP_744248 |
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| Protein GI | 26988823 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
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| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.281276 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0980554 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCCACTTG CCTTGCCCAG CCACGCCGCC GTCAATACCA CCCTGCCTGC CAAAGTGCAG
CAGGCGCTCA AGGCCAACAA GCTGCAGGAC ACAGCACTGT CGCTGGTGAT GCTGCCGCTG
GACGGCCCCG GCACCCCGAC CGTGTTCAAT GCCGATGTGT CGGTGAACCC GGCGTCGACC
ATGAAACTGG TCACCACCTA CGCCGCCCTC GAACTGCTTG GCCCGACCTT CCAGTGGAAA
ACCGAGTTCT ACACCGACGG CACCCTGAGC AACGGCGTGC TTAACGGTAA CCTCTACCTT
AAAGGTGGCG GTGACCCCAA ACTGAACATG GAAAAGCTGT GGCTGCTGAT GCGTGACCTG
CGCGCCAATG GCGTGCGCAC CGTCACCGGT GACCTGGTGC TGGACCGCAG CCACTTCGTG
CAACCCAACC TGCCGCAGTT CAACGACGAC GGCGGTGATG AAAACAAGCC GTTCCTGGTC
AAGCCCGACT CGCTGCTGGT CAACCTCAAG GCCCTGCGCT TCGTGGCGCG CAATGATGGT
GGCAAGGTCA CCGTCGCCGT CGAGCCACCG ATTGCCCGCA TCCGCATCGA CAACCAGGTC
AAGCCGGTAG CCTCTAAGAA ATGCACCGGT GATGTGCGCT ACAACCCGGT GCCCCAGGCC
GACGGCATCA GTGTAACGGT CAGCGGCCAA CTAGGTGACG GCTGCAACTC GCAAACCTAC
CTGTCACTGC TCGACCATTC CACCTACGCC GCCGGTGCCG TGCGCGCAAT CTGGAACGAA
CTGGGTGGCA ACATCCAGGG TGGCGACCGC ATCGAGAATG TGCCCAAGAG TGCTCGCCTG
CTGGCCCGCG CCTTCTCGCC AGACCTGGTG GAAGTGATCC GCGACATCAA CAAGTACAGC
AACAACACCA TGGCCCAGCA GCTGTTCCTG AGCCTTGGCG CGCAGTTCCG CACCGATGCC
GATGGCGACG ACGCCCGTGC TGCCCAGCGC GTGGTACGCC AATGGCTGGC GAAAAAGGGC
ATCACCGCGC CGCATCTGGT GATGGAAAAC GGCTCTGGCC TGTCGCGTGC CGAACGGGTC
AGTACCCGGG AAATGGCCGA GATGCTGAAA GCCGCCTGGA AGAGCCCTTA TGCTGCCGAA
TTCATGAGCT CGATGCCGCT GGTGGGCATG GACGGCACGA TGCGCAAGCG TCTCAAGCGC
ACCGCGATGG CCGGCGAAGG GCACATCAAG ACCGGCACAC TGAACACTGT GCGGGCGATT
GCCGGCTTCA GCCGCGACAG TAACGGCCAT ACCTGGGCGG TAGCGGCGAT TCTCAACGAC
CCGAAACCGT GGGGTGCCTC GCAGGTGCTG GATCAGGTGT TGCTTGACCT GTATCGCCAG
CCGAAGCTGG CTGGCAGTAC AGCGGCCAAC TGA
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| Protein sequence | MPLALPSHAA VNTTLPAKVQ QALKANKLQD TALSLVMLPL DGPGTPTVFN ADVSVNPAST
MKLVTTYAAL ELLGPTFQWK TEFYTDGTLS NGVLNGNLYL KGGGDPKLNM EKLWLLMRDL
RANGVRTVTG DLVLDRSHFV QPNLPQFNDD GGDENKPFLV KPDSLLVNLK ALRFVARNDG
GKVTVAVEPP IARIRIDNQV KPVASKKCTG DVRYNPVPQA DGISVTVSGQ LGDGCNSQTY
LSLLDHSTYA AGAVRAIWNE LGGNIQGGDR IENVPKSARL LARAFSPDLV EVIRDINKYS
NNTMAQQLFL SLGAQFRTDA DGDDARAAQR VVRQWLAKKG ITAPHLVMEN GSGLSRAERV
STREMAEMLK AAWKSPYAAE FMSSMPLVGM DGTMRKRLKR TAMAGEGHIK TGTLNTVRAI
AGFSRDSNGH TWAVAAILND PKPWGASQVL DQVLLDLYRQ PKLAGSTAAN
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