| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2078 |
|---|
| Symbol | |
|---|
| ID | 1042785 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 2365562 |
|---|
| End bp | 2366467 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637145492 |
|---|
| Product | DNA-binding transcriptional regulator LysR |
|---|
| Protein accession | NP_744228 |
|---|
| Protein GI | 26988803 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.135243 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAACTGT CCGTCCGCCA CATCGAAGTG TTCCGCGCCA TCATGGCCGC TGGCAGTGTC
ACGGGGGCGG CGCGCCTGCT GTTCACCTCG CAGCCGACCG TCAGCCGCGA ACTGGCGCGG
CTGGAGCAGG TGACTGGCCT GAACCTGTTC GAGCGCGAGG GCGGGCGCCT GGTGGCGACG
GCCCAGGCGC TGCTGTTGAT CGAAGAGGTC GAGCGGGCCT ACGTCGGGCT GGAGCGGATC
GATCGCTTTG CCCAGGCCAT CCGCAACTTC GAGCAGGGCC GGCTGGCCAT CACCTGCCTG
CCGCTGTTCT CGCAAACCTT GTTGCCCAAG GCTTGCCAGC GCTTTCACCA GCAGCACAGT
GGCGTGAGCG TGAGCATTCT GGCGCAGGAG TCGCCGTTGC TGGAGGAGTC ACTGGTTGCC
CAGCAGCATG ACCTTGGCCT GACTGAAGTC GAACAGATAC CGCGCGGCGC GTATGGTGAA
TTGCTGTTCA GTGCCAACAT GGTGTGCGTG TTGCCCGAGC ATCACCCGCT GCAGGTGAAG
GCTGAACTGG AGCTGAGTGA TTTCCATGAG GTCGATTTCA TTAACCTGGC CAGCCTGGAT
ACCTACCGCC AGCGTCTGGA TCAGCACTTT CGTGCAGCCG GGGTTAACCG CCGCACGGTC
ATCGAAACCA CCAGTGCCGC TTCGGTGTGC GCCATGGTCA GGCAAGGCCT GGGGGTGGCG
ATCATCAACC CGCTCAGCGG GCTGGAGGCG GCGCAAGGCG GGTTGCCGAT CCGCAGGTTA
CGGGTATCGG TGCCCTATCA GGTGATGCTC ATACGCCCGG ACCATCGGCC GGCATCGGCA
GCGGTGGAGC CGTTTTGCGA GGCGTTGCGG GTGCAGGCCA AAGAAATGCA GCAGGCGCTG
GCCTGA
|
|---|
| Protein sequence | MKLSVRHIEV FRAIMAAGSV TGAARLLFTS QPTVSRELAR LEQVTGLNLF EREGGRLVAT
AQALLLIEEV ERAYVGLERI DRFAQAIRNF EQGRLAITCL PLFSQTLLPK ACQRFHQQHS
GVSVSILAQE SPLLEESLVA QQHDLGLTEV EQIPRGAYGE LLFSANMVCV LPEHHPLQVK
AELELSDFHE VDFINLASLD TYRQRLDQHF RAAGVNRRTV IETTSAASVC AMVRQGLGVA
IINPLSGLEA AQGGLPIRRL RVSVPYQVML IRPDHRPASA AVEPFCEALR VQAKEMQQAL
A
|
|---|
| |