| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2070 |
|---|
| Symbol | |
|---|
| ID | 1042810 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 2356108 |
|---|
| End bp | 2356818 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637145484 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | NP_744220 |
|---|
| Protein GI | 26988795 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.527007 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGCAC TGGAAAGGGA CTACGGACAC GGCGATGAAG TGGCCAGCCA CTGCCACGCC
GAAGACCAGC TGATTTACGC CGCCAGCGGC GTGATGCGGG TCAGCAGCGA GGGCGGCAGC
TGGGTGATCC CCGGCGGGCA TGCCTTGTGG ATGCCCGCCG GGGTCAGCCA TGCCATCCGC
ATGAAAGGCG TGGTCTGCAT GCGCACCTTG CTGCTCGATG CCCACATCGA ACGCTGCCAG
GTCATCGTCG TGTCCGGCCT GCTGCGCGAA CTGATCCTGG CGGCGTCACG GGTGCTGAAC
CTGCGCGACG GCGCGCATGC TCGGGCGCTG ATCCTGTACG AACTCGCCGC CGCCCGGCGC
ATCGATGCCT TCGTCCCGAC GCCGCAGCAC GCACGCCTGC GTGCCTGGTG CGAGCGCTTC
CTGCAGGACC CGGCCCAGGA CCTGACCCTG GAGCAATGCG GCGCACAACT GAACATGAGT
GCCCGCAGTG TGGCCAGGCT GTTCCAGCGC GAGGTGGGCA TGTCGTATGG CCAATGGCGC
GCCCGTGCCC GGGTGATGCT CAGCCAGCAA TGCCTGGCCG ATGGCAAGCC GATCCTGAAC
GTTGCGCTGG AGCACGGCTA CCAGAGCGCC AGCGCCTTTA CTGCCATGTT CAAGCGCATC
CTCGGCCATG CGCCGAGTGA TTGGCAAAAC GGTACCGCGC GCGAGTACTG A
|
|---|
| Protein sequence | MQALERDYGH GDEVASHCHA EDQLIYAASG VMRVSSEGGS WVIPGGHALW MPAGVSHAIR
MKGVVCMRTL LLDAHIERCQ VIVVSGLLRE LILAASRVLN LRDGAHARAL ILYELAAARR
IDAFVPTPQH ARLRAWCERF LQDPAQDLTL EQCGAQLNMS ARSVARLFQR EVGMSYGQWR
ARARVMLSQQ CLADGKPILN VALEHGYQSA SAFTAMFKRI LGHAPSDWQN GTAREY
|
|---|
| |