| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2025 |
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| Symbol | sbcD |
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| ID | 1042899 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 2300115 |
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| End bp | 2301353 |
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| Gene Length | 1239 bp |
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| Protein Length | 412 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637145439 |
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| Product | nuclease SbcCD, D subunit |
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| Protein accession | NP_744175 |
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| Protein GI | 26988750 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0420] DNA repair exonuclease |
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| TIGRFAM ID | [TIGR00619] exonuclease SbcD |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTCTGT TTCATACCTC CGACTGGCAC CTGGGCCAAA GCCTGCACGG CCAGGAACGC
GACTTCGAAC ACGCCTGCTT CCTCGACTGG CTGCTCGGCC AACTGCGCCT GCGCCAGCCG
GATGCGCTGC TGATTGCGGG CGACATCTTC GACACCGTCA ACCCGCCCGT CAAAGCCCAG
GAACGCCTCT ACGACTTCAT CGTCCAGGCC CACGAGCAAC AGCCCAAGCT GGACATCGTG
ATGATTGCCG GCAACCACGA CTCCGGTTCG CGCATCGAGC TGCCGGCCGC ACTCATGCGC
CGCCTGCGCA CCCATGCGTT GGGCCGTGTG CACTGGCTGG ACGAGGGCCA GCTGGATGCC
GAACGCCTGT TGATTCCGCT GACCAACGGC CGTGGCAAGG TGGCCGCCTG GTGCCTGGCC
CTGCCGTTCC TGCGCCCGGC CGAAGTGACC GGCCCGCAGC TGGGTGACGA CTACCTGCAA
GGCATCACCC AGGTGCATCA GCAACTGATC GCCGCCGCCC TGAAGAAACG CAAGAAAGAC
CAGGCGCTGA TCGCCATCAG CCACGCGCAC ATGGCCGGTG GCGCGGTATC GGAAGACTCC
GAACGCAGCC TGATCATCGG CAACGCCGAG GCGCTGCCGG CCAAGCTGTT CGACAAGGCT
ATCAGCTACG TCGCCCTGGG CCATCTGCAC AAGCCGCAGA AGGTCAACCG CGAAGAGCGC
ATCCGCTACA GCGGCTCGCC AATCCCGCTG TCGTTCGCCG AAATCAACTA CCCGCACCAG
GTCCTGGAAG TGGAGTTGGA CGGTAACGGC CTGGTCAGCG TCGAGCCACG CCCCGTACCA
CGCGCCGTGG CCCTGCAACG GGTGGGCCCG GCACCGCTGG GCGAGCTGTT GCAGCAACTG
GCCGACCTGC CCGTGGTCGA CCTGCTTGAA GACCCCAACC GCCAGCCCTG GCTGGAGGTG
CGGGTGTTGC TCGACGAGCC GCAACCCGAC CTGCGCCAGC AGATCGAAAC CGCGCTTGAA
GGCAAGGCGG TACGGCTGAT TCGTATCAGC GCCGAGTACG CCGGCCGCAA CAACGCCGAA
GACGATGACC TGGCCTTTGT CGAACTGGCC CAGATGACCC CGCAAGACCT GTTCAGCCGC
GCCTGGGAAC AAGCCTACGG CAACCCCGCC GACGATCAGG CGCTGGCCGA CTTCGCCCTG
CTGTTGCAGG ACGTGCAGCA GGAAGAGGAA CAGCCATGA
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| Protein sequence | MRLFHTSDWH LGQSLHGQER DFEHACFLDW LLGQLRLRQP DALLIAGDIF DTVNPPVKAQ
ERLYDFIVQA HEQQPKLDIV MIAGNHDSGS RIELPAALMR RLRTHALGRV HWLDEGQLDA
ERLLIPLTNG RGKVAAWCLA LPFLRPAEVT GPQLGDDYLQ GITQVHQQLI AAALKKRKKD
QALIAISHAH MAGGAVSEDS ERSLIIGNAE ALPAKLFDKA ISYVALGHLH KPQKVNREER
IRYSGSPIPL SFAEINYPHQ VLEVELDGNG LVSVEPRPVP RAVALQRVGP APLGELLQQL
ADLPVVDLLE DPNRQPWLEV RVLLDEPQPD LRQQIETALE GKAVRLIRIS AEYAGRNNAE
DDDLAFVELA QMTPQDLFSR AWEQAYGNPA DDQALADFAL LLQDVQQEEE QP
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