| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2024 |
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| Symbol | sbcC |
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| ID | 1042900 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 2296474 |
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| End bp | 2300118 |
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| Gene Length | 3645 bp |
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| Protein Length | 1214 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637145438 |
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| Product | SMC domain protein |
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| Protein accession | NP_744174 |
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| Protein GI | 26988749 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0419] ATPase involved in DNA repair |
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| TIGRFAM ID | [TIGR00618] exonuclease SbcC |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGATTC TCGCCATCCG CCTGAAGAAC CTGGCATCGC TGGCCGGCCC GATCGACATC
GATTTCACCG CAGAACCCTT GGCCAGCGCT GGCCTGTTCG CCATCACCGG GCCTACCGGT
GCCGGCAAGA GCACCCTGCT TGACGCCCTG TGCCTGGCGC TGTTCGGCAC CGTGCCGCGC
CTCAATGCCA TTGGCCGTGA GGCCAAGGTG CCGGATGCCG ACGGCGACAT CCCCACCTCC
GACCCGCGCA ACCTGCTGCG CCGTGGCACC GGCAGCGGTT TTGCCGAGGT CGATTTCGTC
GGCATCGACG GCCGCCGCTA CCGCGCCCGC TGGGAAGCCA ACCGCGCCCG CGACAAGGCC
AACGGCAAAC TGCAGCACAG CCGTCAAAGC TTCTACGACC TCGACAGCGA GCAAGTGCTC
GGCAGTGGCA AGAACGAATA CAAGCAACTG GTCGAAGCCC GTCTGGGCCT GAACTTCGAA
CAGTTCACCC GTGCGGTGAT GCTGGCCCAG AGCGAGTTCG GCGCGTTCCT CAAGGCCGAC
GACAAAGACC GTAGCGAGTT GCTGGAAAAG CTCACCAACA CCGCGATCTA CACCCGCCTG
GGCCAGCGTG CCTTCAGCAA GGCGCGCGAA GCCGGCGAGG CGCACAACGC CCTGAAAGAA
CGCGCCAGCC ATCTACTGCC GATGGCTGCC GAGGCCCGTG CCGAGCTCGA CCAGCGCCTG
GAGCAGGCGC AACAGCAGTT CAAGGCCGAC CAGGCCGGCG AGCGCCAGCT GGAGCAGCAA
CGCAACTGGC TGAATGAACA ACGCCAGCTT CAGGCCCAAC ACACCGAAGC CAGCACCACG
CTGCAGGCCG CCGAACTGGA CTGGCAACAG CTGGCCGAAC CACGCCTGGA CCTGGCACGC
CTGGAGCGCC TGGCCCCACA GCGTCACCAG TTCCACCGCC GACAGGCCCT GAGCGCACAG
CTGGCGCCAG TGGCCGCGAA AATTGCCGAA CAGCAACAGC AGCAAGCCGA ACTGCAGGTG
CGCACCCGCG AACTCGAACA GGCGCTGGAC ACTGCGCGCC AAGCGCTTGC CGACCGCCAG
GCCGAGCACG GCGAGAATGC GCCGCGCCTG CGCCAGGCCT TTGCCGCTCA GGATACGCTG
GCACGCCTGG ACCAGGAGCT GGCCGCCCAG CGCAGCATCA GCCAGCAGGC GCAACAGCAG
GTTGCTGACG GCCAGCAGCA ACTGCAGCAG CTGGAAGACA ACCAGCAGCG CAGCGTGCAA
CAACTGGCGC TGATCGACAC CGCGCTTGCC GACAGCCAGC ACCTGGCGGG CCTGGCCAAT
GCCTGGCACG CCTACCTGCC GCAACTGAAG CAGGTGATGC TGATCGGTGG CCGGCTGACC
AAGGGCCGAG AAGAGCTACC CGGCCTGCAG GCCCAGGCCA GCCAGGCCAA TGCGCGCTTG
CAGGCCGAGC GCGACGCCTA CGACCTGTTG TTCCGTGAAG CCAAGGCCGA ACCCCAGGCC
CTGGCCGAGC AGATCGACCT GCTCGGCGGC ATGTTGCAGG ACAACCGCAA ACAGCAGCGC
GCCGTAGAGG AAATGTCACG CCTGCACGGC CGTGAACAGG AGCTGCGCCA GCAGCTGGAT
GCCCTGCGCG AACGGCAGCA GCAGGCCATG CTGCAACGCC AGCAACTGAT TACCGAAGGC
ACCGCCGCCA AGGCCGAGCT GGAGGCCGCC GAACAGGCGT TGACGCTCAC CCGTCAACTG
CTGGAACGCC AACGCCTGGC ACGCAACACC AGCGTCGAAG AACTGCGTAA CCAACTGCGT
GACGGCGAAC CCTGCCCGGT CTGTGGCAGC GCCGAACACC CCTTCCATCA GCCAGAAGCG
CTGCTGCAGA GCCTGGGCCG CCATGACCAG GCCGAAGAGC ACGCCGCCCA GAAGCAGGTC
GAGACGCTCA ACAGCAAGCT GGTGGAGCTG CGTACCCAGC TGGGTGTGGT CAATGCCCAG
CTCAAGGACT TCCAGCAACA GCAGCAGCGA CTGGGCGAAC AGTTGCAACC GCTGGTGGCT
CAGGTACAGG CACACAGCCT GTGGCCAGCC CTCGCCCCGC AGGACGACAA GGCCCGTAGC
GCCTGGCTCG ACAGCCAGCT GCGTCGCCTG GATGAAGAAA TCAGCCAGGA CGAGAAACGC
CAGAGCGCCC TGCTCGCCCT GCAACGGGAC GCGGCCCGCC TCAACCAGCA ATTGCAGGCT
GCCCACGACG CCCAACAACA GGCCCAGCGC CACCTGGAGC AACAGCACCA AGCCCTGGCC
AACGACGAGC AGCTGTTGCA GCAAGGCCTG AACGACCTGG CCGGCGTACT ACCAGAGGAA
GCGCTCAAGG CCCTCAACGA CGACCCGGCC AATGCCTTCC TCGCCCTCGA CCAGCAGATT
GCCCAGCGCC TGCAGCAACT GGAACAGCGC AAGGACGAAC TGGAAGAGCA GCAAGCCCGC
CAAACCCAGC TGGACAAGCT GCGTGACCAA CAGCAGGCGC GCGTGCAAGG CCAGCAGCAG
TTACAGCAGA AACTGGCCGC CCTCGACGAG CAACGCCAGC AAGCCCTGGC CTCACTCGCC
GAACTGCTCG GCGAACATGC CAGCGCCGAA GCCTGGCAGC AGCACATGGA CACCGCGCTG
GAGCACGCCC GCACCCTTGA CGCCGACACC GCCCAGCGCC TGCAAGATCT GCGCACCCAA
GGCGTGCAAC TGGCCAGCGA GCTCAAGGCC AATACCCAGC AACAACAGGC ACTGGATGCC
GAATGCCAAC AGTTGCAGGC CCAGATCGCC CAGTGGCGCA GCGAGCATCC GGAACTGGAC
GATGCCGGCC TCGATCGCCT GCTGGCCATG GATGACGCGC AAGTCAATGA ATTGCGCCAG
CGTTTGCAAG GCGCGGAAAA AGCCATCGAG CAGGGCCGCG TCCTGCTGCA GGAGCGCGAA
CAGCGCCTGC AGCATCACGC GGCACAGATG ACCGTGGACA CCACGGTCCA AGCCCTGGAG
CAAGCCTTGG CCGAACTGCG CGAACGCCTG GCAAACCACG AGCAGCAATG CGCCGAATTG
CGTGCACAAC AGGCCGACGA CCAGCGCCGC CAGCAGGCCC ACCAGGCGCT GGCGGCAGAA
ATCGAACAGG CCCACCAGCA GTGGCAACGC TGGGCCCGCC TCAATGCCCT GATCGGTTCG
GCCTCCGGTG ATGTGTTCCG CAAGATCGCC CAAGGCTACA ACCTTGACCT GCTGCTGCAC
CACGCCAACG CCCAGCTACG TCAGCTGGCC CGTCGCTACC GCCTCAAGCG CGGCGGCAGC
GCCCTGGGCC TGCTGGTGCT GGACACCGAG ATGGGCGACG AACTGCGTTC GGTGCACTCG
TTGTCGGGCG GGGAAACCTT CCTGGTGTCG CTGGCCCTGG CCCTGGGCCT GGCGTCGATG
GCGTCCAGCA CCTTGCGTAT CGAGTCGCTG TTCATCGACG AAGGTTTCGG CAGCCTCGAC
CCCGAGTCGC TGCAACTGGC AATGGACGCC CTCGACGGCT TGCAAGCCCA GGGTCGCAAA
GTGGCGGTGA TCTCCCACGT ACAGGAAATG CACGAGCGCA TCCCGGTGCA GATCCAGGTG
CGGCGCCAGG GTAATGGCCT CAGTGACGTG GAGGTGTGCG GGTGA
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| Protein sequence | MKILAIRLKN LASLAGPIDI DFTAEPLASA GLFAITGPTG AGKSTLLDAL CLALFGTVPR
LNAIGREAKV PDADGDIPTS DPRNLLRRGT GSGFAEVDFV GIDGRRYRAR WEANRARDKA
NGKLQHSRQS FYDLDSEQVL GSGKNEYKQL VEARLGLNFE QFTRAVMLAQ SEFGAFLKAD
DKDRSELLEK LTNTAIYTRL GQRAFSKARE AGEAHNALKE RASHLLPMAA EARAELDQRL
EQAQQQFKAD QAGERQLEQQ RNWLNEQRQL QAQHTEASTT LQAAELDWQQ LAEPRLDLAR
LERLAPQRHQ FHRRQALSAQ LAPVAAKIAE QQQQQAELQV RTRELEQALD TARQALADRQ
AEHGENAPRL RQAFAAQDTL ARLDQELAAQ RSISQQAQQQ VADGQQQLQQ LEDNQQRSVQ
QLALIDTALA DSQHLAGLAN AWHAYLPQLK QVMLIGGRLT KGREELPGLQ AQASQANARL
QAERDAYDLL FREAKAEPQA LAEQIDLLGG MLQDNRKQQR AVEEMSRLHG REQELRQQLD
ALRERQQQAM LQRQQLITEG TAAKAELEAA EQALTLTRQL LERQRLARNT SVEELRNQLR
DGEPCPVCGS AEHPFHQPEA LLQSLGRHDQ AEEHAAQKQV ETLNSKLVEL RTQLGVVNAQ
LKDFQQQQQR LGEQLQPLVA QVQAHSLWPA LAPQDDKARS AWLDSQLRRL DEEISQDEKR
QSALLALQRD AARLNQQLQA AHDAQQQAQR HLEQQHQALA NDEQLLQQGL NDLAGVLPEE
ALKALNDDPA NAFLALDQQI AQRLQQLEQR KDELEEQQAR QTQLDKLRDQ QQARVQGQQQ
LQQKLAALDE QRQQALASLA ELLGEHASAE AWQQHMDTAL EHARTLDADT AQRLQDLRTQ
GVQLASELKA NTQQQQALDA ECQQLQAQIA QWRSEHPELD DAGLDRLLAM DDAQVNELRQ
RLQGAEKAIE QGRVLLQERE QRLQHHAAQM TVDTTVQALE QALAELRERL ANHEQQCAEL
RAQQADDQRR QQAHQALAAE IEQAHQQWQR WARLNALIGS ASGDVFRKIA QGYNLDLLLH
HANAQLRQLA RRYRLKRGGS ALGLLVLDTE MGDELRSVHS LSGGETFLVS LALALGLASM
ASSTLRIESL FIDEGFGSLD PESLQLAMDA LDGLQAQGRK VAVISHVQEM HERIPVQIQV
RRQGNGLSDV EVCG
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