| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1993 |
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| Symbol | |
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| ID | 1043026 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 2259410 |
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| End bp | 2262145 |
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| Gene Length | 2736 bp |
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| Protein Length | 911 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637145404 |
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| Product | peptidoglycan-binding LysM |
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| Protein accession | NP_744144 |
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| Protein GI | 26988719 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3170] Tfp pilus assembly protein FimV |
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| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.650593 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.139886 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTCGAA TTCGCAAACT GGTTCTGGCC ATGGCTGCAG CATCCGCGCT GTCGTCTGGC
ATGGCGAATG CGCTGGGCCT GGGGGAGCTG ACCCTGAAGT CGGCACAGAA TCAGCCGCTG
GACGCCGAGA TCGAATTGCT CGACGTGCGC GACCTCAAAG CCGCCGAAGT GGCGCCGAGC
CTGGCGCCAC CGGAAGAGTT CAGCAAGGCC GGGGTGGCGT TTCCGACCTA CCTCGAAGAC
CTGACCTTCA CACCGGTGAT CAACCCCAAC GGCAAAAGTG TGCTGCGCGT GACCTCCAGT
CAGCCGCTGC CAGGTCCGGT GGTCAAGTTC CTGGTGCAGG TGATGTGGCC GCAGGGCCGC
CTGCTGCGTG ACTATAGCGT GCTGCTCGAC CAGGCCAAGG CACAGGGCGA ACAGCCGGCG
GCAGGCAATG TCACACCGGC CATCACCGGT GCCAGCAGCT ACACCACCCA GCGTCGCGAC
ACCTTGTGGC AGATTGCCGC GCGTAACACC CAGGGTGGAT CGATCCAGCA GACCATGATC
GCGATCCAGG CTTTGAACCC GGATGCCTTC ATCGGCAACA ACATCAACCA GCTGAAGGTT
GGCCAGGTAC TGCGCCTGCC CGACCAGCAG CAGATCCAGA GCATCGCCCA GGGCGAGGCG
AACCGCGAGG TGGCCGAGCA GTATGCGGCC TGGCGTGAAG GCCGTCGCCT GGGACCGCGT
GCCCGCCAGC TGGATGCCAC TCGCCGTGGC GCCGCCGAGG CTGCACCGTC GCGTATCGCC
CAGGGCGACA ACCTGCGCCT GGTCAGCCCG GGCAACCAGG CCGGTGCAGG CCAGGCCAAG
GCGTTGAATG ACGAGCTGGC CATGGCCCAG GAAAGCCTGG ACACCAGCCG TCGCGACAAC
GAAGAACTGA AAAGCCGCAT GGCCGACCTG CAGAGCCAGC TGGACAAGCT GCAGCGCCTG
ATCGAGCTGA AGAACAACCA GTTGGCACGC CTGGAAGGCC AGGGCGCAGC CGCGTCGGCA
GCGGCTGCCG ATACCCCGGA GCAGCCCGTG GTCAATCCGG CACCTGCTGC TGCCGATACC
GCACCCCAGC CTGTGCCGGA CACCCAGCCA GCACCCGCCA GCCAGCCGAA GGGGGCGCTC
GACTCGGTCC TGGGCAACCC GTGGCTTCTG GGCGTGATTG CCGGTTCCAG CATCCTGGTG
CTGGCACTGC TGCTGTGGCT GCTGGCGCGC AAACGCAAGG CCCAGCAAGA AGCCGAGAAG
CACCTGCGCA TGGCGCGGGC GCTGGAAGAA GAGCAGGGCG CAGGTTTCGA CAGCGATATC
GAGAGCTTCG GCGGCGTCGA AGCCCCCGAG CCGGGTGTAA CCCTGTCGCC GGCTGTGGTT
GCCGCTTCGG CTGCAGCTGC CGTCGCTGCG GAAAAAGTGG CAGAACCGGT CGCCGAGGCA
GCACCCGAGC CTGAACCACA AGCAGACCCG CACGCCGCGC TGCTGGCGCA AGTCGACCAA
TGCCTGGCCG AAGGCCGCCT TAATCGTGCC ACCGAGCTGC TGGAGCCCGC CGTGGCCGCC
GCACCGGAGC GTGACGACCT GCGCCTGAAA CTGATGGACG TGTACGCCCG CCAGGGTGAC
CAGAGCGCGT TCGCCGAACA GGAGCGTCAG TTGCCGGCCA GCGAGCAGAA CGTTGCTGAA
GTCGCCGGCC TGAAAGAGCG TTACCCCGCC ATGCTCGGCC TGGCCGCTGC CGGCCTGGGT
GCGGCGGCGC TGGCTGCCGA AATGGATGAG CAGTACGTGC AAGAGCTGCT GCACGATGAG
CCCAAAGCGC CAGTGGTTGC CGATGTGGTG CCTGACGAGT TGTCCGGGTT CGAGCCGCAA
GAGCAGGCTG AGCCAGAGGT TGTCGCGCAA GCAGCGCCTG ACGCTGAGCT GGACGCCTTC
GATGATGTGC CAACGCTCGA TGCAACGGAC CTGGCCGAGC AGGATCTGGA CAGCGCCTTC
GACCTGAGCC TGGGTGAAGA CCTGGCCGAT CAAGACCCGC TGGCCGCGTC CGTGCTGGAC
GAGCCGATGG CGCAGGGGGG CGTACCCGAC GAACTGATAA TCGCTGAGCC TGTGCTCGAT
GAGCCCGTAC AGGAAGAAGC TCAGCCGGAA GAACAGCCCT TTGCCGTGGA TGCCGAGCTG
CAAGCCGACG CCGACGCCGA TTTCGAGGCC ATGCTGGCTC AGGCCGAGCC TCAGCCTGCC
GTGGACCTGT CTGATTTCGA CCTCGACGTC AGCGAGCCGG TTGCCCCGGC TGCCCCTGAG
GCGCTGGAGC AAGATCCGCT GGATGTCACC GCCGAACTGG CTGCCTTCGA CAGCGAACCG
GAGTTTGATC CGGTCTCCGA GTTCGACTTG CCATCGGACT TCGACCTGTC CCTGTCGTTG
GAAGACGATT CGCCAGCCGC CAAGAGCTTT GCCTCGGAGC TCAATGACGT CAACGCCGAG
CTGGACAAGC TGTCGCAGAG CCTCGAAACG CCATCGCTGG AGCCGCACTT CACCAGCGAA
GACGCGGTGG CGCAACCAGA GCCTGAGCCT TTGGACGACC TGGACTTCGA CTTCTTCTCC
GGCAGTGACG AAGTCGCCAC CAAGCTCGAC CTGGCCCGTG CCTATATCGA CATGGGTGAC
AGCCAGGGCG CGCGCGACAT CCTCGACGAA GTGGTCAAGG ATGGCGACGA CAGCCAGCGT
CAGGAAGCCG AGGACATGCT CTCCCGGCTG GTCTGA
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| Protein sequence | MLRIRKLVLA MAAASALSSG MANALGLGEL TLKSAQNQPL DAEIELLDVR DLKAAEVAPS
LAPPEEFSKA GVAFPTYLED LTFTPVINPN GKSVLRVTSS QPLPGPVVKF LVQVMWPQGR
LLRDYSVLLD QAKAQGEQPA AGNVTPAITG ASSYTTQRRD TLWQIAARNT QGGSIQQTMI
AIQALNPDAF IGNNINQLKV GQVLRLPDQQ QIQSIAQGEA NREVAEQYAA WREGRRLGPR
ARQLDATRRG AAEAAPSRIA QGDNLRLVSP GNQAGAGQAK ALNDELAMAQ ESLDTSRRDN
EELKSRMADL QSQLDKLQRL IELKNNQLAR LEGQGAAASA AAADTPEQPV VNPAPAAADT
APQPVPDTQP APASQPKGAL DSVLGNPWLL GVIAGSSILV LALLLWLLAR KRKAQQEAEK
HLRMARALEE EQGAGFDSDI ESFGGVEAPE PGVTLSPAVV AASAAAAVAA EKVAEPVAEA
APEPEPQADP HAALLAQVDQ CLAEGRLNRA TELLEPAVAA APERDDLRLK LMDVYARQGD
QSAFAEQERQ LPASEQNVAE VAGLKERYPA MLGLAAAGLG AAALAAEMDE QYVQELLHDE
PKAPVVADVV PDELSGFEPQ EQAEPEVVAQ AAPDAELDAF DDVPTLDATD LAEQDLDSAF
DLSLGEDLAD QDPLAASVLD EPMAQGGVPD ELIIAEPVLD EPVQEEAQPE EQPFAVDAEL
QADADADFEA MLAQAEPQPA VDLSDFDLDV SEPVAPAAPE ALEQDPLDVT AELAAFDSEP
EFDPVSEFDL PSDFDLSLSL EDDSPAAKSF ASELNDVNAE LDKLSQSLET PSLEPHFTSE
DAVAQPEPEP LDDLDFDFFS GSDEVATKLD LARAYIDMGD SQGARDILDE VVKDGDDSQR
QEAEDMLSRL V
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