Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1983 |
Symbol | |
ID | 1043046 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 2246299 |
End bp | 2249709 |
Gene Length | 3411 bp |
Protein Length | 1136 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637145394 |
Product | sensory box protein |
Protein accession | NP_744134 |
Protein GI | 26988709 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0811196 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGCCAG GGCATTCATG GCCCTGCTCG ACAGCCACTC AGGGCCCACC TGACCGGCTG TCAGCCAGCT ATTCGTATTC CAAGGACACG TCATACGCCA CAGGTCTGGT ACCAATGCCC AAATCAGCAA ACCGCTTTTT GCGCCTGCCG CGAATACCCG CAGCTGATCC CCAGGAGTCC GAGCAGGCCT GGCAGAACGC CCCGCAACTG CTGGCAGCGC TCAACGGTGC GCACCTGGGT GCCTGGCTAT GGGATATCGA AAGCGGCAGG GTTAGTTGGT CGCGGGGCAC CCAGGCCCTG TTCGGTTTCG ATCCACAGCG GCCACTGCCC GCCGATATCG ATTACCTCGA CCTGCTGCCC GAGGAGGATC GCGCCCGCAC GCGCCAGGTG TTCCAGGCGG TGGTCAATGG CGAGCCGGTG GAGCAAGCCA TGCGCCACCG TATCCGCTGG CCGGACGGCA GCCTGCACTG GCTGGAGATC AACGGCAGCC TGACCCACGA CCCGCACGGC CGACCGCAGA TGATCGGCGT GATCCGCGAG ATCACCCGCC AGCGCGAACG GGAAACGGCG CTGATCAATT CGGAAAAGCG CTTCGCCACG CTGTTTCACC TGAGCCCCAA CGCCATTTTG CTGACCCGCC GCCGCGATGG CATGATCTTC GAGGTCAACC AGCACTTCGA AGACATGTTC GGCTGGCCCG GCAGCCAGGT GATCGGCAAG ACCAGCCTGG AACTGGGCCT GTGGGTCAAC CCCGAACAGC GCCACCAGAT AGTGGAGTCG ACCCGTGCCA ACGGCGGCCC GCTGATCATG GAGGTGCAAT TCCGCGCAAC CAGCGGCAAG GTGCATGACG GCATCCTGTG CACCCAGGGC ATCGAGCTGG AAGGCGTGAC TTTCCTGATC AGTACATTCG TCGACACCAC CGAACGCAAG CGTGCCGAGC AGGCCCTGAA GGACAGCCAG GAGCGCCTGG ACCTGGCCCT GGACTCGGCG CAACTTGGCA CCTGGGACTG GCACATCCCA AGCGGCATGC TCTACGGCTC GGCCCGCGCC GCGCAGCTGC ATGGCTTGCC GCCCATCCCC TTTCATGAAT CGTTCGATGC GTTCTTCGAG GGCGTGCCGG AGCACGAGCG CAACTCGATG CGACAAGCCT ACCGTAGCCT GCGCGAAGGG CCCGCCGGCA ACTATCAGAT CACCTACCGG GTGCAGCTGG AAAACGGCAC TTCACGCTAC ATCGAAAGCC GCGCGCGGCT GTACCGCGAC GACCAGGGCA TCCCCCTGCG CATGGCGGGC ACCTTGCTCG ACATCACCGA TCAGGTGGAG CGCGAACAAC GCCTGAGCGC CTCGGAAGAG AAGTTTGCCA GCCTGTTCCA GGTCAGCCCC GACCCGATCT GCGTCACACG CCAGGACACT GGCCAGTTCA TCGAGATCAA TCCGGCGTTC ACCCAGACCT TCGGCTGGAG CAGCGCGCAG GTGCTTGGGC GTACCGCCGA GGAAATCGGC CTGTGGGCCG AGTCCGTCGA GCGCGCGAAA CGTATCGAGC AGGTGATCCG CGAACAGGCC TTGAGTAACG TCGCCGTGGT ACTCAACCAC CGCAATGGCG ACCCGCTGAC CTGTGTGATT TCCAGCCGCC TGATCACCGT CGACGACCAG CCCTGCAGCG TGACCACCCT GCGCGACATC ACCCAGCAAC AACGCGCCGA AGCCGCGCTG AAGTCCAGCG AGGAGAAGTT CGCCAAGGCC TTCCACTCCA GCCCCGACGC CATCACCATC ACCGAACGCC ACAGCGGCCG CTACCTGGAG GTCAACGACG GCTTCTGCCG CCTGACCGGC TACAGCACTG ATGAAGTGAT CGGCCACACG GTGTATGAGA TCGGCATCTG GGCCGACGAC AAGCAGCGCA GCGCGCTGCT GGCCGAGTTG CGCGAGCGCG GCCGGGTACA CCACCGCGAG ATGCTCGGGC GCAACAAGCG TGGCGATATC CTCACGGTCG AGGTTTCGGT GGAACCGATC ACCCTCAACG AAGTGGATTG CCTGCTGCTG ACCGCCCGCG ACGTCAGCCA GCTGAAGAAC GCCCAGGCGC AGATACGCCA CCTGGCCTAT CACGACCCGC TGACCAACCT GCCCAACCGC GCCTTGCTGA TGGACCGCCT GAGCCAGCAG ATCGCCCTGC TCAAGCGCCA TAACCTGCGT GGCGCCCTGC TGTTCCTCGA CCTCGACCAC TTCAAGCACA TCAACGACTC GCTGGGCCAC CCGGTGGGCG ACACCGTGCT GAAGATCATC ACCGCCCGCC TTGAGGCCAG CGTGCGCCTG GAGGACACCG TGGCGCGTCT GGGGGGCGAC GAATTCGTGG TGCTGCTTAG CGGCCTGGAA GGGAGCCGCG AACACGTTGA AGAGAAAGTG CGCGAGCTGG CCGACACCCT GCGCGAACTG CTGGCCGAGC CAATGTCACT GGATGGCCAG CGCCTGCAGG TAACGCCCAG CATCGGCGTG GCGCTGATCC CCGACCACGG CACCACACCG GCCGACCTGC TCAAACGTGC CGATATCGCC CTGTACCGGG CCAAGGACTC CGGTCGCAAC ACCACCCAGC TGTTTCACAC CACCATGCAG AAGGCCGCCA GCGAGCGCCT GCGCATGGAA AACGACCTGC GCCTGGCCCT GGCCCGTGGC GAGCTGGCAC TGCACTTCCA GCCGCAGGTG GATGCCCGCG ACAACCGCAT CGTCGGTGCC GAAGTACTGT TGCGCTGGCA CCACCCGCAA CTGGGTCAGC AACCGCCCTC GCAGTTCATC CAGGTACTGG AAGAAAGTGG CCTGATCCTT GAAGTTGGCA GCTGGATTCT CGACGAAGCC TGCGACGCCT GCGCCCGCAT GCTGACCGAC GGGCTGATCG ACGCTGATGA TTTCAACCTG TGCGTGAACA TAAGCCCGCG ACAGTTCCGC CAGAACGACT TTGTCGGGCG GGTGCTGCGC AGCCTGGACG ATTACCGCCT GCCGCGGCAG ATGCTGACGC TGGAAATCAC AGAAGGCATC GTCATACAGA ACCTGGAAGA CACCATCAGC AAGATGTGCG AGCTGAAGCG CTACGGGGTG AGTTTTGCCA TGGATGACTT CGGCACCGGC TATTCCTCGC TGACTTACCT GAAGCGCCTG CCGGTCGATG CGCTGAAGAT CGACCAGAGC TTCGTACGCG ATGCTCCGGT CGACCCCAAC GACGCAGAAA TTGTCCGCGC CATTGTCGCC ATGGCGCGCA GCCTGGACCT GGCGGTGATT GCCGAAGGGG TAGAACTGAC CGAACAGCTG GCGTTTCTCG AGCGGCTGGG GTGCCATCTG TACCAGGGTT ATCTGCACAG CCGGCCATTA CCGTTACCGG AGTTTCGGCA GATGTTGCTG GAGGCGCCGG CAGATTACTG A
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Protein sequence | MRPGHSWPCS TATQGPPDRL SASYSYSKDT SYATGLVPMP KSANRFLRLP RIPAADPQES EQAWQNAPQL LAALNGAHLG AWLWDIESGR VSWSRGTQAL FGFDPQRPLP ADIDYLDLLP EEDRARTRQV FQAVVNGEPV EQAMRHRIRW PDGSLHWLEI NGSLTHDPHG RPQMIGVIRE ITRQRERETA LINSEKRFAT LFHLSPNAIL LTRRRDGMIF EVNQHFEDMF GWPGSQVIGK TSLELGLWVN PEQRHQIVES TRANGGPLIM EVQFRATSGK VHDGILCTQG IELEGVTFLI STFVDTTERK RAEQALKDSQ ERLDLALDSA QLGTWDWHIP SGMLYGSARA AQLHGLPPIP FHESFDAFFE GVPEHERNSM RQAYRSLREG PAGNYQITYR VQLENGTSRY IESRARLYRD DQGIPLRMAG TLLDITDQVE REQRLSASEE KFASLFQVSP DPICVTRQDT GQFIEINPAF TQTFGWSSAQ VLGRTAEEIG LWAESVERAK RIEQVIREQA LSNVAVVLNH RNGDPLTCVI SSRLITVDDQ PCSVTTLRDI TQQQRAEAAL KSSEEKFAKA FHSSPDAITI TERHSGRYLE VNDGFCRLTG YSTDEVIGHT VYEIGIWADD KQRSALLAEL RERGRVHHRE MLGRNKRGDI LTVEVSVEPI TLNEVDCLLL TARDVSQLKN AQAQIRHLAY HDPLTNLPNR ALLMDRLSQQ IALLKRHNLR GALLFLDLDH FKHINDSLGH PVGDTVLKII TARLEASVRL EDTVARLGGD EFVVLLSGLE GSREHVEEKV RELADTLREL LAEPMSLDGQ RLQVTPSIGV ALIPDHGTTP ADLLKRADIA LYRAKDSGRN TTQLFHTTMQ KAASERLRME NDLRLALARG ELALHFQPQV DARDNRIVGA EVLLRWHHPQ LGQQPPSQFI QVLEESGLIL EVGSWILDEA CDACARMLTD GLIDADDFNL CVNISPRQFR QNDFVGRVLR SLDDYRLPRQ MLTLEITEGI VIQNLEDTIS KMCELKRYGV SFAMDDFGTG YSSLTYLKRL PVDALKIDQS FVRDAPVDPN DAEIVRAIVA MARSLDLAVI AEGVELTEQL AFLERLGCHL YQGYLHSRPL PLPEFRQMLL EAPADY
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