Gene PP_1978 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_1978 
Symbol 
ID1043054 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp2242425 
End bp2242964 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content66% 
IMG OID637145389 
ProductTetR family transcriptional regulator 
Protein accessionNP_744129 
Protein GI26988704 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0203016 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0208763 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGACA AGAAGAGCAG AACCCGCGAA CGCATTCTGG AGGCTGCGCG CACTGCGTTG 
ATCCAGCACG GCCCGGCCGA GCCCAGCGTC AGTCAGGTGA TGGGTGCGGC AGGCCTGACC
GTCGGCGGCT TCTATGCGCA CTTCGACAGC AAGGACGAGC TTATGCTCGA AGCGTTCCGC
CAGTTGTTGG GTGAGCGCCG TGCCTTGCTC GCCCAGATCG ACCCCAATCT CGATGGCGCC
GGGCGGCGAG CGCTGGCCGG GGCCTTCTAC CTCTCGCGCA AGCACCGGGA CTGCGAAGTA
CATGCTTGCC CGCTGCCTAA CGCGTTGGGC GAAATGCAGC GCCTGCCGGA GGTCTTCCGC
GAGGTGCTGG CCGAGCACAT CGAGTTGATG ACTGCCGCGA TGGTCGACCG CCCTGAGGAT
GCCGACAAAG CGCTGGCCGA CCTGGCCCTG ATGGTTGGGG GGCTGGCGCT GGCCCGGGCC
TTGGGGACCA GTGACCTGTC TGACCGTATT CTGCGCGCCG CCAAATCGGC GGTGCTTTAA
 
Protein sequence
MSDKKSRTRE RILEAARTAL IQHGPAEPSV SQVMGAAGLT VGGFYAHFDS KDELMLEAFR 
QLLGERRALL AQIDPNLDGA GRRALAGAFY LSRKHRDCEV HACPLPNALG EMQRLPEVFR
EVLAEHIELM TAAMVDRPED ADKALADLAL MVGGLALARA LGTSDLSDRI LRAAKSAVL