Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1978 |
Symbol | |
ID | 1043054 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 2242425 |
End bp | 2242964 |
Gene Length | 540 bp |
Protein Length | 179 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637145389 |
Product | TetR family transcriptional regulator |
Protein accession | NP_744129 |
Protein GI | 26988704 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0203016 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0208763 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGACA AGAAGAGCAG AACCCGCGAA CGCATTCTGG AGGCTGCGCG CACTGCGTTG ATCCAGCACG GCCCGGCCGA GCCCAGCGTC AGTCAGGTGA TGGGTGCGGC AGGCCTGACC GTCGGCGGCT TCTATGCGCA CTTCGACAGC AAGGACGAGC TTATGCTCGA AGCGTTCCGC CAGTTGTTGG GTGAGCGCCG TGCCTTGCTC GCCCAGATCG ACCCCAATCT CGATGGCGCC GGGCGGCGAG CGCTGGCCGG GGCCTTCTAC CTCTCGCGCA AGCACCGGGA CTGCGAAGTA CATGCTTGCC CGCTGCCTAA CGCGTTGGGC GAAATGCAGC GCCTGCCGGA GGTCTTCCGC GAGGTGCTGG CCGAGCACAT CGAGTTGATG ACTGCCGCGA TGGTCGACCG CCCTGAGGAT GCCGACAAAG CGCTGGCCGA CCTGGCCCTG ATGGTTGGGG GGCTGGCGCT GGCCCGGGCC TTGGGGACCA GTGACCTGTC TGACCGTATT CTGCGCGCCG CCAAATCGGC GGTGCTTTAA
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Protein sequence | MSDKKSRTRE RILEAARTAL IQHGPAEPSV SQVMGAAGLT VGGFYAHFDS KDELMLEAFR QLLGERRALL AQIDPNLDGA GRRALAGAFY LSRKHRDCEV HACPLPNALG EMQRLPEVFR EVLAEHIELM TAAMVDRPED ADKALADLAL MVGGLALARA LGTSDLSDRI LRAAKSAVL
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