Gene PP_1967 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_1967 
Symbol 
ID1043068 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp2228862 
End bp2229644 
Gene Length783 bp 
Protein Length260 aa 
Translation table11 
GC content65% 
IMG OID637145371 
ProductTatD family deoxyribonuclease 
Protein accessionNP_744118 
Protein GI26988693 
COG category[L] Replication, recombination and repair 
COG ID[COG0084] Mg-dependent DNase 
TIGRFAM ID[TIGR00010] hydrolase, TatD family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000974137 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCTCGTAG ATTCCCATTG CCACCTCGAC CGTCTTGACC TCACTGCTCA CCAGGGCTCC 
CTCGACGCTG CCCTGCAGGC GGCGCGTGAG CGTGGGGTCG GGCATTTCCT GTGCATTGGC
GTCAGTGCCG AGAATGCGGG TGCAGTGAAG GCGCTGAGCG AGCAGTACGC TGACGTCGAC
TGCTCGGTGG GCGTGCACCC GCTGGACCTG GCCCCTGGCG AAACCCCGGC GTTGGAATGG
TTGTTGCGCG AACTGGCCCA CCCGCATGTG GTGGCGATTG GTGAAACCGG GCTGGATTAC
CACTACGAGC CGGAGGCTGC CGAGCTGCAG CAGGCCTCGT TCCGCCTGCA CCTGGAGGCC
TCCAGGCAGA CCGGCAAGCC GGTGATCGTG CATACCCGGG CGGCGCGCGC CGATACCCTG
GCGCTGCTGC GTGAGGCCAA CCTGCCGCAG GCTGGCGTGC TGCACTGCTT TACCGAGGAC
TGGGACATGG CCAAGGCCGC GCTGGACCTG GGTTATTACA TTTCGCTGTC GGGCATCGTT
ACCTTCCGCA ATGCCGATGC CTTGCGGGAA GTGGCGCGGC AGGTGCCGGT CGATCGCTTG
TTGGTGGAGA CCGATTCGCC CTACCTGGCG CCGATTCCGC ACCGGGGCAA GCCGAACCTG
CCGCAGTATG TGCGGGAGGT GGCGGAGTAT GTGGCTTCGC TGCGTGGGGC CAGTTATGAG
CAGTTGGCAG AGCAGACCAC GGCAAATTTC AAGCGATTGT TCCCATTGGC GCGGGTGGCT
TGA
 
Protein sequence
MLVDSHCHLD RLDLTAHQGS LDAALQAARE RGVGHFLCIG VSAENAGAVK ALSEQYADVD 
CSVGVHPLDL APGETPALEW LLRELAHPHV VAIGETGLDY HYEPEAAELQ QASFRLHLEA
SRQTGKPVIV HTRAARADTL ALLREANLPQ AGVLHCFTED WDMAKAALDL GYYISLSGIV
TFRNADALRE VARQVPVDRL LVETDSPYLA PIPHRGKPNL PQYVREVAEY VASLRGASYE
QLAEQTTANF KRLFPLARVA