Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1967 |
Symbol | |
ID | 1043068 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 2228862 |
End bp | 2229644 |
Gene Length | 783 bp |
Protein Length | 260 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637145371 |
Product | TatD family deoxyribonuclease |
Protein accession | NP_744118 |
Protein GI | 26988693 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0084] Mg-dependent DNase |
TIGRFAM ID | [TIGR00010] hydrolase, TatD family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.000974137 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCTCGTAG ATTCCCATTG CCACCTCGAC CGTCTTGACC TCACTGCTCA CCAGGGCTCC CTCGACGCTG CCCTGCAGGC GGCGCGTGAG CGTGGGGTCG GGCATTTCCT GTGCATTGGC GTCAGTGCCG AGAATGCGGG TGCAGTGAAG GCGCTGAGCG AGCAGTACGC TGACGTCGAC TGCTCGGTGG GCGTGCACCC GCTGGACCTG GCCCCTGGCG AAACCCCGGC GTTGGAATGG TTGTTGCGCG AACTGGCCCA CCCGCATGTG GTGGCGATTG GTGAAACCGG GCTGGATTAC CACTACGAGC CGGAGGCTGC CGAGCTGCAG CAGGCCTCGT TCCGCCTGCA CCTGGAGGCC TCCAGGCAGA CCGGCAAGCC GGTGATCGTG CATACCCGGG CGGCGCGCGC CGATACCCTG GCGCTGCTGC GTGAGGCCAA CCTGCCGCAG GCTGGCGTGC TGCACTGCTT TACCGAGGAC TGGGACATGG CCAAGGCCGC GCTGGACCTG GGTTATTACA TTTCGCTGTC GGGCATCGTT ACCTTCCGCA ATGCCGATGC CTTGCGGGAA GTGGCGCGGC AGGTGCCGGT CGATCGCTTG TTGGTGGAGA CCGATTCGCC CTACCTGGCG CCGATTCCGC ACCGGGGCAA GCCGAACCTG CCGCAGTATG TGCGGGAGGT GGCGGAGTAT GTGGCTTCGC TGCGTGGGGC CAGTTATGAG CAGTTGGCAG AGCAGACCAC GGCAAATTTC AAGCGATTGT TCCCATTGGC GCGGGTGGCT TGA
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Protein sequence | MLVDSHCHLD RLDLTAHQGS LDAALQAARE RGVGHFLCIG VSAENAGAVK ALSEQYADVD CSVGVHPLDL APGETPALEW LLRELAHPHV VAIGETGLDY HYEPEAAELQ QASFRLHLEA SRQTGKPVIV HTRAARADTL ALLREANLPQ AGVLHCFTED WDMAKAALDL GYYISLSGIV TFRNADALRE VARQVPVDRL LVETDSPYLA PIPHRGKPNL PQYVREVAEY VASLRGASYE QLAEQTTANF KRLFPLARVA
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