Gene PP_1905 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_1905 
Symbolrne 
ID1043177 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp2147241 
End bp2150516 
Gene Length3276 bp 
Protein Length1091 aa 
Translation table11 
GC content66% 
IMG OID637145313 
Productribonuclease, Rne/Rng family 
Protein accessionNP_744060 
Protein GI26988635 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1530] Ribonucleases G and E 
TIGRFAM ID[TIGR00757] ribonuclease, Rne/Rng family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.879394 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000947805 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGAAAAGAA TGCTGATTAA CGCGACTCAA CCCGAAGAGT TGCGTGTAGC CCTGGTGGAC 
GGCCAACGTC TCTACGACCT GGACATCGAG TCCGGCGCGC GCGAGCAGAA AAAGGCCAAC
ATCTACAAAG GCAAGATCAC CCGCATCGAA CCCAGCCTCG AAGCCGCCTT CGTCGACTTC
GGCTCCGAAC GTCACGGCTT CCTGCCGCTG AAAGAAATCT CCCGCGAGTA CTTCAAGAAG
GCCCCGGAAG GCCGGGTCAA CATCAAGGAA GTGCTCAGCG AAGGCCAGGA AGTCATCGTT
CAGGTCGAGA AGGAAGAGCG CGGCAACAAA GGCGCCGCCC TCACCACCTT CATCAGCCTG
GCCGGCCGCT ACCTGGTGCT GATGCCCAAC AACCCGCGTG CCGGTGGCAT CTCCCGCCGC
ATCGAAGGCG AAGAGCGCAA CGAACTGCGC GAAGCCCTGA ACGGCCTGAC CGTACCGGGC
GACATGGGCC TGATCGTGCG CACCGCCGGC CTTGGCCGCA GCAGCGAAGA AATGCAGTGG
GACCTGGACT ACCTGCTGCA GCTGTGGACC GCCATCAAGG AAGCGTCCCT GGACCGCGCC
GCGCCATTCC TGATCTACCA GGAAAGCAAC GTCATCATCC GCGCCATCCG CGACTACCTG
CGTCAGGACA TCGGCGAAGT ACTGATCGAC AGCATCGACG CCCAGGAAGA AGCGCTGACC
TTCATCCGCC AGGTGATGCC GCAGTACGCC AGCAAGGTCA AGCTGTACGA AGACAGCGTA
CCGCTGTTCA ACCGCTTCCA GATCGAAAGC CAGATCGAGA CCGCCTTCCA GCGCGTGGTC
GACCTGCCGT CCGGCGGTTC GATCGTGATC GACCCGACCG AAGCCCTGGT GTCGATCGAC
ATCAACTCGG CGCGCGCCAC CAAAGGCAGC GACATCGAAG AAACCGCCCT GCAGACCAAC
CTGGAAGCGG CCGAGGAAAT CGCCCGCCAG CTGCGCCTGC GTGACATCGG CGGCCTGATC
GTCATCGACT TCATCGACAT GACCCCGGCG AAGAACCAGC GCGCTGTTGA AGAGCGCGTG
CGTGAATGCC TGGAAGCCGA CCGCGCCCGC GTGCAGGTTG GCCGCATCTC GCGCTTCGGC
CTGCTGGAAA TGTCCCGTCA GCGTCTGCGC CCATCGCTGG GCGAAAGCAG CGGCATCGTC
TGCCCACGCT GCTCCGGCAC CGGCATCATC CGTGACGTCG AATCGCTGTC GCTGGCCATC
CTGCGCCTGA TCGAAGAAGA AGCCCTGAAG GACCGCACCG CTGAAGTGCG TGCTCAAGTG
CCGATCCCGG TAGCCGCGTT CCTGCTGAAC GAAAAGCGTA ACTCGATCAC CAAGATCGAG
CTGCGCACCC GTGCGCGCAT CATCATCCTG CCGAACGACC ACCTGGAAAC CCCGCACTTC
GAAGTCCAGC GCCTGCGCGA CGACAACCCT GAAGTGCTGA ACAACCAGTC CAGCTACGAA
ATCGCCGCCG CCGAAGCCGA AGAAGCGCCG CAACCGACCG CCACCCGCAC CCTGGTACGC
CAGGAAGCCG CAGTGAAGAC GGCCCCGGCC CGCGCCAACG CACCGGTACC GGCCGCCGCT
GAAGAGCCCC AGGCTGCCGC GCCGGTCGCC CCTGCCCCGA GCGCTCCGGA GCCAAGCCTG
TTCAAAGGCC TGGTGAAGTC GCTGGTGAGC CTGTTCGCCG GCAAGGACGA GCCTGCCGCC
GCGCCAGTGG CTCCCGCCGC CGAAAAACCG GCTGCCGAGC GCAGCCCGCG CAACGAAGAA
CGCCGCAACG GCCGCCAGCA AAGCCGCAAC CGCAACGGCC GCCGCGACGA AGAACGCAAG
CCGCGTGAAG AGCGTGCCGA GCGCGCACCG CGTGAAGAGC GTGCACCGCG CGAGGAACGC
GCCCCACGCG AAGAGCGTGC ACCGCGCGAG GAACGTGCCC CACGTGAAGA GCGTGCACCG
CGTGAAGAAC GTGCGCCGCG CCAGCCACGC GAAGACCGCC GTGGCAACCG CGGCGAAGAG
CGCGTTCGCG AACTGCGCGA GCCGCTGGAC GCTACCCCGC CAGCCGAACG CGAAGAGCGC
CAGCCGCGTG AAGAACGTGT AGCCCGCGAA GAGCGAGCGC CACGTGAAGA GCGCGCACCG
CGTGAAGAGC GTGCTCCACG TGAAGAACGC GCACCGCGTG AAGAGCGTGC CCCACGTGAA
GAACGGGCCC CACGTGAAGA ACGCGCCCCT CGCGAAGAAC GTGCTCCACG TGAAGAACGC
GCACCGCGCG AAGAGCGTGC TCCACGCGAA GAACGCGCCC CGCGCCCACC ACGCGAAGAG
CGCCAACCAC GCGCTGCCGA AGAAGCAACC GAACAGGCAG CCGAGCTGGC CGAAGAGCAA
CTGCCAGGCG AAGAGCTGCT GCAAGACGAG CAGGAAGGCA CCGATGGCGA GCGCCCGCGC
CGCCGCTCCC GTGGCCAGCG TCGTCGCAGC AACCGTCGTG AGCGTCAGCG CAATGCCAAC
GGCGAGCTGA TCGACGGCAG TGAAGAAGAA GGCAGCGAAG AGCAGCCACA ACAGCACCAG
GCCACCGAGC TGGGTGCCGA ACTGGCTGCT GGCCTTGCCG TGACGGCTGC TGTCGCCAGC
AGCAACATCA GCTCCGACGC AGAAGCCCAG GCCAACCAGC AGGCCGAGCG TGCTACCGCC
GAAGTCGCTG CCGTTGCAGA AACCGACAAC AGCGAAGCCG CCCAACCGGT CGAGCAGGTC
GAAGCGGCCA CCAAAGCTCA AGAAGCGTCC GTGGCCCCAG CGGTCGAGCA GCCGGTCACC
GAGCCAGTGG CCGCAGCCGA GGCAACTGCC GAGCCTGTGG TCGAAGTGGC CCCGCAGCCT
GTCGCTGAAG ATGCACCTGC TGTTGAGCCG GTCGTGGTTG CAGAAACCGC GGTCACTGAA
ACCCCGGCAG AAGCCCCAGT GGTAGAAGCC GGTGAAATCG AACAGGCCCC GGCCGTGGTC
GAAGTCGCTC CGGTTGCCGC ACAGCCTGCC CCGGTTGTCG AAGCCCAGCC AGAAGTGGTG
GCCGAGCCTG CACCTGCGGT GGTCGAACCT GCACCTGCAG TGGTCGAACC TGCCACTGTC
ATGCTGGCCA ACGGCCGTGC ACCGAACGAC CCACGTGAAG TGCGTCGCCG CAAGCGGGAG
GCCGAGGCTG CTGCCAAAGC GGCACAGGAA GCTGCTGCAG CTTCCCAGGA ACCAGCCCTG
GAAGCCGCCG ATGAGCACAA ACCTCATCAC GGCTGA
 
Protein sequence
MKRMLINATQ PEELRVALVD GQRLYDLDIE SGAREQKKAN IYKGKITRIE PSLEAAFVDF 
GSERHGFLPL KEISREYFKK APEGRVNIKE VLSEGQEVIV QVEKEERGNK GAALTTFISL
AGRYLVLMPN NPRAGGISRR IEGEERNELR EALNGLTVPG DMGLIVRTAG LGRSSEEMQW
DLDYLLQLWT AIKEASLDRA APFLIYQESN VIIRAIRDYL RQDIGEVLID SIDAQEEALT
FIRQVMPQYA SKVKLYEDSV PLFNRFQIES QIETAFQRVV DLPSGGSIVI DPTEALVSID
INSARATKGS DIEETALQTN LEAAEEIARQ LRLRDIGGLI VIDFIDMTPA KNQRAVEERV
RECLEADRAR VQVGRISRFG LLEMSRQRLR PSLGESSGIV CPRCSGTGII RDVESLSLAI
LRLIEEEALK DRTAEVRAQV PIPVAAFLLN EKRNSITKIE LRTRARIIIL PNDHLETPHF
EVQRLRDDNP EVLNNQSSYE IAAAEAEEAP QPTATRTLVR QEAAVKTAPA RANAPVPAAA
EEPQAAAPVA PAPSAPEPSL FKGLVKSLVS LFAGKDEPAA APVAPAAEKP AAERSPRNEE
RRNGRQQSRN RNGRRDEERK PREERAERAP REERAPREER APREERAPRE ERAPREERAP
REERAPRQPR EDRRGNRGEE RVRELREPLD ATPPAEREER QPREERVARE ERAPREERAP
REERAPREER APREERAPRE ERAPREERAP REERAPREER APREERAPRE ERAPRPPREE
RQPRAAEEAT EQAAELAEEQ LPGEELLQDE QEGTDGERPR RRSRGQRRRS NRRERQRNAN
GELIDGSEEE GSEEQPQQHQ ATELGAELAA GLAVTAAVAS SNISSDAEAQ ANQQAERATA
EVAAVAETDN SEAAQPVEQV EAATKAQEAS VAPAVEQPVT EPVAAAEATA EPVVEVAPQP
VAEDAPAVEP VVVAETAVTE TPAEAPVVEA GEIEQAPAVV EVAPVAAQPA PVVEAQPEVV
AEPAPAVVEP APAVVEPATV MLANGRAPND PREVRRRKRE AEAAAKAAQE AAAASQEPAL
EAADEHKPHH G