Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1905 |
Symbol | rne |
ID | 1043177 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 2147241 |
End bp | 2150516 |
Gene Length | 3276 bp |
Protein Length | 1091 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637145313 |
Product | ribonuclease, Rne/Rng family |
Protein accession | NP_744060 |
Protein GI | 26988635 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.879394 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.000000947805 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
| |
Sequence |
Gene sequence | ATGAAAAGAA TGCTGATTAA CGCGACTCAA CCCGAAGAGT TGCGTGTAGC CCTGGTGGAC GGCCAACGTC TCTACGACCT GGACATCGAG TCCGGCGCGC GCGAGCAGAA AAAGGCCAAC ATCTACAAAG GCAAGATCAC CCGCATCGAA CCCAGCCTCG AAGCCGCCTT CGTCGACTTC GGCTCCGAAC GTCACGGCTT CCTGCCGCTG AAAGAAATCT CCCGCGAGTA CTTCAAGAAG GCCCCGGAAG GCCGGGTCAA CATCAAGGAA GTGCTCAGCG AAGGCCAGGA AGTCATCGTT CAGGTCGAGA AGGAAGAGCG CGGCAACAAA GGCGCCGCCC TCACCACCTT CATCAGCCTG GCCGGCCGCT ACCTGGTGCT GATGCCCAAC AACCCGCGTG CCGGTGGCAT CTCCCGCCGC ATCGAAGGCG AAGAGCGCAA CGAACTGCGC GAAGCCCTGA ACGGCCTGAC CGTACCGGGC GACATGGGCC TGATCGTGCG CACCGCCGGC CTTGGCCGCA GCAGCGAAGA AATGCAGTGG GACCTGGACT ACCTGCTGCA GCTGTGGACC GCCATCAAGG AAGCGTCCCT GGACCGCGCC GCGCCATTCC TGATCTACCA GGAAAGCAAC GTCATCATCC GCGCCATCCG CGACTACCTG CGTCAGGACA TCGGCGAAGT ACTGATCGAC AGCATCGACG CCCAGGAAGA AGCGCTGACC TTCATCCGCC AGGTGATGCC GCAGTACGCC AGCAAGGTCA AGCTGTACGA AGACAGCGTA CCGCTGTTCA ACCGCTTCCA GATCGAAAGC CAGATCGAGA CCGCCTTCCA GCGCGTGGTC GACCTGCCGT CCGGCGGTTC GATCGTGATC GACCCGACCG AAGCCCTGGT GTCGATCGAC ATCAACTCGG CGCGCGCCAC CAAAGGCAGC GACATCGAAG AAACCGCCCT GCAGACCAAC CTGGAAGCGG CCGAGGAAAT CGCCCGCCAG CTGCGCCTGC GTGACATCGG CGGCCTGATC GTCATCGACT TCATCGACAT GACCCCGGCG AAGAACCAGC GCGCTGTTGA AGAGCGCGTG CGTGAATGCC TGGAAGCCGA CCGCGCCCGC GTGCAGGTTG GCCGCATCTC GCGCTTCGGC CTGCTGGAAA TGTCCCGTCA GCGTCTGCGC CCATCGCTGG GCGAAAGCAG CGGCATCGTC TGCCCACGCT GCTCCGGCAC CGGCATCATC CGTGACGTCG AATCGCTGTC GCTGGCCATC CTGCGCCTGA TCGAAGAAGA AGCCCTGAAG GACCGCACCG CTGAAGTGCG TGCTCAAGTG CCGATCCCGG TAGCCGCGTT CCTGCTGAAC GAAAAGCGTA ACTCGATCAC CAAGATCGAG CTGCGCACCC GTGCGCGCAT CATCATCCTG CCGAACGACC ACCTGGAAAC CCCGCACTTC GAAGTCCAGC GCCTGCGCGA CGACAACCCT GAAGTGCTGA ACAACCAGTC CAGCTACGAA ATCGCCGCCG CCGAAGCCGA AGAAGCGCCG CAACCGACCG CCACCCGCAC CCTGGTACGC CAGGAAGCCG CAGTGAAGAC GGCCCCGGCC CGCGCCAACG CACCGGTACC GGCCGCCGCT GAAGAGCCCC AGGCTGCCGC GCCGGTCGCC CCTGCCCCGA GCGCTCCGGA GCCAAGCCTG TTCAAAGGCC TGGTGAAGTC GCTGGTGAGC CTGTTCGCCG GCAAGGACGA GCCTGCCGCC GCGCCAGTGG CTCCCGCCGC CGAAAAACCG GCTGCCGAGC GCAGCCCGCG CAACGAAGAA CGCCGCAACG GCCGCCAGCA AAGCCGCAAC CGCAACGGCC GCCGCGACGA AGAACGCAAG CCGCGTGAAG AGCGTGCCGA GCGCGCACCG CGTGAAGAGC GTGCACCGCG CGAGGAACGC GCCCCACGCG AAGAGCGTGC ACCGCGCGAG GAACGTGCCC CACGTGAAGA GCGTGCACCG CGTGAAGAAC GTGCGCCGCG CCAGCCACGC GAAGACCGCC GTGGCAACCG CGGCGAAGAG CGCGTTCGCG AACTGCGCGA GCCGCTGGAC GCTACCCCGC CAGCCGAACG CGAAGAGCGC CAGCCGCGTG AAGAACGTGT AGCCCGCGAA GAGCGAGCGC CACGTGAAGA GCGCGCACCG CGTGAAGAGC GTGCTCCACG TGAAGAACGC GCACCGCGTG AAGAGCGTGC CCCACGTGAA GAACGGGCCC CACGTGAAGA ACGCGCCCCT CGCGAAGAAC GTGCTCCACG TGAAGAACGC GCACCGCGCG AAGAGCGTGC TCCACGCGAA GAACGCGCCC CGCGCCCACC ACGCGAAGAG CGCCAACCAC GCGCTGCCGA AGAAGCAACC GAACAGGCAG CCGAGCTGGC CGAAGAGCAA CTGCCAGGCG AAGAGCTGCT GCAAGACGAG CAGGAAGGCA CCGATGGCGA GCGCCCGCGC CGCCGCTCCC GTGGCCAGCG TCGTCGCAGC AACCGTCGTG AGCGTCAGCG CAATGCCAAC GGCGAGCTGA TCGACGGCAG TGAAGAAGAA GGCAGCGAAG AGCAGCCACA ACAGCACCAG GCCACCGAGC TGGGTGCCGA ACTGGCTGCT GGCCTTGCCG TGACGGCTGC TGTCGCCAGC AGCAACATCA GCTCCGACGC AGAAGCCCAG GCCAACCAGC AGGCCGAGCG TGCTACCGCC GAAGTCGCTG CCGTTGCAGA AACCGACAAC AGCGAAGCCG CCCAACCGGT CGAGCAGGTC GAAGCGGCCA CCAAAGCTCA AGAAGCGTCC GTGGCCCCAG CGGTCGAGCA GCCGGTCACC GAGCCAGTGG CCGCAGCCGA GGCAACTGCC GAGCCTGTGG TCGAAGTGGC CCCGCAGCCT GTCGCTGAAG ATGCACCTGC TGTTGAGCCG GTCGTGGTTG CAGAAACCGC GGTCACTGAA ACCCCGGCAG AAGCCCCAGT GGTAGAAGCC GGTGAAATCG AACAGGCCCC GGCCGTGGTC GAAGTCGCTC CGGTTGCCGC ACAGCCTGCC CCGGTTGTCG AAGCCCAGCC AGAAGTGGTG GCCGAGCCTG CACCTGCGGT GGTCGAACCT GCACCTGCAG TGGTCGAACC TGCCACTGTC ATGCTGGCCA ACGGCCGTGC ACCGAACGAC CCACGTGAAG TGCGTCGCCG CAAGCGGGAG GCCGAGGCTG CTGCCAAAGC GGCACAGGAA GCTGCTGCAG CTTCCCAGGA ACCAGCCCTG GAAGCCGCCG ATGAGCACAA ACCTCATCAC GGCTGA
|
Protein sequence | MKRMLINATQ PEELRVALVD GQRLYDLDIE SGAREQKKAN IYKGKITRIE PSLEAAFVDF GSERHGFLPL KEISREYFKK APEGRVNIKE VLSEGQEVIV QVEKEERGNK GAALTTFISL AGRYLVLMPN NPRAGGISRR IEGEERNELR EALNGLTVPG DMGLIVRTAG LGRSSEEMQW DLDYLLQLWT AIKEASLDRA APFLIYQESN VIIRAIRDYL RQDIGEVLID SIDAQEEALT FIRQVMPQYA SKVKLYEDSV PLFNRFQIES QIETAFQRVV DLPSGGSIVI DPTEALVSID INSARATKGS DIEETALQTN LEAAEEIARQ LRLRDIGGLI VIDFIDMTPA KNQRAVEERV RECLEADRAR VQVGRISRFG LLEMSRQRLR PSLGESSGIV CPRCSGTGII RDVESLSLAI LRLIEEEALK DRTAEVRAQV PIPVAAFLLN EKRNSITKIE LRTRARIIIL PNDHLETPHF EVQRLRDDNP EVLNNQSSYE IAAAEAEEAP QPTATRTLVR QEAAVKTAPA RANAPVPAAA EEPQAAAPVA PAPSAPEPSL FKGLVKSLVS LFAGKDEPAA APVAPAAEKP AAERSPRNEE RRNGRQQSRN RNGRRDEERK PREERAERAP REERAPREER APREERAPRE ERAPREERAP REERAPRQPR EDRRGNRGEE RVRELREPLD ATPPAEREER QPREERVARE ERAPREERAP REERAPREER APREERAPRE ERAPREERAP REERAPREER APREERAPRE ERAPRPPREE RQPRAAEEAT EQAAELAEEQ LPGEELLQDE QEGTDGERPR RRSRGQRRRS NRRERQRNAN GELIDGSEEE GSEEQPQQHQ ATELGAELAA GLAVTAAVAS SNISSDAEAQ ANQQAERATA EVAAVAETDN SEAAQPVEQV EAATKAQEAS VAPAVEQPVT EPVAAAEATA EPVVEVAPQP VAEDAPAVEP VVVAETAVTE TPAEAPVVEA GEIEQAPAVV EVAPVAAQPA PVVEAQPEVV AEPAPAVVEP APAVVEPATV MLANGRAPND PREVRRRKRE AEAAAKAAQE AAAASQEPAL EAADEHKPHH G
|
| |