Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1896 |
Symbol | |
ID | 1043188 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 2138824 |
End bp | 2139603 |
Gene Length | 780 bp |
Protein Length | 259 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637145304 |
Product | ABC transporter |
Protein accession | NP_744051 |
Protein GI | 26988626 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.312969 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000781572 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGTGTGG AACTGCGCAC CAACTGGGTC GCCCTGAACA CCATCGTCTA CCGCGAAGTG CGGCGCTTCC TGCGCATCTG GCCGCAGACG TTGCTGCCGC CAGCGATCAC CATGGTCCTG TACTTCGTCA TCTTCGGTAA CCTGATTGGC CGGCAGATCG GCGACATGGG TGGCTTCACC TACATGCAGT ACATCGTGCC GGGGCTGATC ATGATGTCGG TGATCACCAA CTCCTACGGC AACGTGGTGT CGAGCTTTTT CGGCAGCAAG TTCCAGCGCT CGATCGAAGA GCTGATGGTG TCGCCGGTGT CGCCGCACAC CATTCTCGTC GGCTATGTGC TGGGTGGGGT GCTGCGTGGT TTGGCGGTGG GTGTGATCGT GACCATCCTG TCGATGTTCT TCACCGACCT GCAGGTGCAC CACCTGGGCG TGACCGTGGC GGTGGTGCTG CTGACGGCCA CCATCTTTTC GCTGCTTGGC TTCGTCAACG CAGTGTTCGC GCGCAACTTC GACGATATCT CGATCATCCC GACCTTCGTG CTGACGCCGC TGACCTACCT GGGCGGGGTG TTCTACTCGA TCAACCTGCT GCCGCCGTTC TGGCAGACCG TGTCGTTGGC CAACCCGGTG CTGCACATGG TCAACTCGTT CCGCTACGGC ATTCTAGGGG TGTCGGATAT CAGCATTGGC ACGGCGATCA CCTTCATGCT GGTGGCCACT GCGGTGCTCT ACGTTGTTTG CGTTCGCTTG CTGGTCAGCG GCCGCGGCAT GCGGGCCTGA
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Protein sequence | MSVELRTNWV ALNTIVYREV RRFLRIWPQT LLPPAITMVL YFVIFGNLIG RQIGDMGGFT YMQYIVPGLI MMSVITNSYG NVVSSFFGSK FQRSIEELMV SPVSPHTILV GYVLGGVLRG LAVGVIVTIL SMFFTDLQVH HLGVTVAVVL LTATIFSLLG FVNAVFARNF DDISIIPTFV LTPLTYLGGV FYSINLLPPF WQTVSLANPV LHMVNSFRYG ILGVSDISIG TAITFMLVAT AVLYVVCVRL LVSGRGMRA
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