| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1880 |
|---|
| Symbol | |
|---|
| ID | 1043215 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 2104921 |
|---|
| End bp | 2107113 |
|---|
| Gene Length | 2193 bp |
|---|
| Protein Length | 730 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637145288 |
|---|
| Product | outer membrane autotransporter |
|---|
| Protein accession | NP_744035 |
|---|
| Protein GI | 26988610 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
|---|
| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR03304] outer membrane insertion C-terminal signal |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.396897 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGAGCC GCCTTTTTCA CGCCCTTCGC CACTGTTCAA CACCCGCTCA TCTCGTGCTG
GCGGGCCCGT TGTTTTTCGC CAGTGCCTGC TGGGCAGAAA CCCTCGTAGA TGCCGATACT
CAGCTGGATG CCGGCAGCAC ACTCGACAGC TACCGGGTGA TCGGCCCGGC CGTTCTGACA
GCCACCGGGG CGACGACGTT GCAGATCGCC GCCCAGGCGG GCGCCACCGT GAACCTGTCG
GATAGCCAGG TCACCGCTGA ATCGAATGGC AATGGCCTGG CGCTCAATGG TGCCAGTGCC
ACCGTACACC GCTCGACCAT CCGCAGTGAC GCCCGTGGCC TGGCGCTGAG TGCTGCAGGG
GCGGGAAACG GCTCGCGCGC CTTGATCAAC GACAGCGTGA TCGAAGGCGG CGTACAAGGC
GCGACCCTCA ATGCCAGTTC TGCCGAACTG CAGCGCAGCG AACTACGCGG GACGGGCGCC
AGCAGCGAGG GCGCACGCCT GGTTGCCGGC ACCCTGATTG CCAGGGACGG CAGCACCATC
AGCGGCGGCA ATTATGGCGC GCGCATTCTT GAGGACGACG GCCGCGGCTC TACGCTGGTG
GTCGACAACA GCCTGATCGA GGGACGCAAC GGGCCAGCGA TTGCCGTCGG CCGAGGGGCC
GGCTTTGCAG CATCGGCGCA GATCGACGTT ATCAACGGTG CCAGCCTCAG TGGTGGCAAC
GGCATGCTGC TGCACGTGGC GGAGGATGCT GCCGCCAACC TGCGGGTCAA CAACAGCCAC
CTGGTCGGCG ATATCGTCGC CGCCAGCGGC GGCACCGCCA ACGTGCTGCT GGAAAACTTC
GCCACCCTCA AAGGCCGGCT GGACAACGTT GCAAGCCTGG AAATCAACAG CGGTGGCGAA
TGGACCCTGG TCGACAACAG CCAGGTGACC GACCTGTCAC TGGATAACGG TGCCGTGCGC
TTCGGCGGGC CGGGCGAATT CTTTACCCTT TCCGTGGAAA ACCTCACCGG CAACGGCACC
TTCATCATGG AGGCCGATTT CAGCACCTCG CAGTCGGACT TCCTCGACGT GACGGGCACC
GCCAGCGGCA ACCACCAGTT GCTGATCAGC GCCAGCGGCA ACGATCCGCT GACAGACAAC
AGCCTGCATG TGGTGCATAC CGCTGCTGGT GATTCACAAT TCTCGCTGCT GGGTGGCTCC
GTGGACCTGG GAGCCTATTC CTACGACCTG GTGCAACGCG GCGACAATGA CTGGTACCTG
GACGCGACCA CCCGTACGGT CAGCCCCGGC ACACAAACGG TGATGGCCTT GGCCAACGTC
GTGCCGACCA TCTGGTACGG CGAGCTCGGC GTGCTGCGTA GCCGCATGGG CGACGTGCGC
CGCAACCCTG GCAAGGCCGG TGGCTGGGTA CGCAGCTACG GTAACCAATT CAATGTCTCG
GCGACGTCTG GCGCGGCGTA CCAGCAACAG CAACAAGGCC TGTCGATCGG CGCAGATGCG
CCCCTGGCAG CTGGCGACGG CAACTGGCTG GTCGGGATCA CGGCCGGCTA CAGCAATTCC
GACCTGAACC TTGCCCGCGG CTCTTCGGCC AGCGTCGACA GCTACCACGC CGGTGCCTAC
GCCACCTGGC TCGATCCCGA AAGCGGCTAT TACATCGACA CCGTGGCGCG CATCAACCGT
TTCCGCAATC AGGCCGACGT GCGCCTGAGT GACGGCAGCA AGGCCAAGGG TGACTACAGC
AACCTGGGTG CTGGCGTTTC GCTGGAGGTG GGGCGTCATC TGAACCTGGC CGACGACTGG
TTCCTCGAAC CGTTCGCTCA ACTGTCCGGG CTCGTGGTCC AGGGCAAGGA CTACAGCCTG
GACAACGGCA TGCGCGCCAA CAGCAACAGT ACCCACTCGC TGCTGGGCAA AGTGGGTACC
TCGGTCGGGC GCACCTTCAG CGCGGGCACA GGCCGTAGCG TGCAACCCTA CCTGCGGGTG
GCAGCAGTTC ATGAGTTCGT CAACGACAAC CAGGTGAAAG TCAACGACAA CCGCTTCAGC
AGCAACCTGG CCGGTTCGCG TGCTGAAATC GGTGCAGGGG TGGCGGTCGC CTGGGGCGAA
AAATGGCAGG CCCACGCCGA CTTCGATTAC AGCCATGGCA GCAAGCTTGA ACAGCCATGG
GGCGTGAGCG TCGGCGCCCG TTACAACTGG TAA
|
|---|
| Protein sequence | MPSRLFHALR HCSTPAHLVL AGPLFFASAC WAETLVDADT QLDAGSTLDS YRVIGPAVLT
ATGATTLQIA AQAGATVNLS DSQVTAESNG NGLALNGASA TVHRSTIRSD ARGLALSAAG
AGNGSRALIN DSVIEGGVQG ATLNASSAEL QRSELRGTGA SSEGARLVAG TLIARDGSTI
SGGNYGARIL EDDGRGSTLV VDNSLIEGRN GPAIAVGRGA GFAASAQIDV INGASLSGGN
GMLLHVAEDA AANLRVNNSH LVGDIVAASG GTANVLLENF ATLKGRLDNV ASLEINSGGE
WTLVDNSQVT DLSLDNGAVR FGGPGEFFTL SVENLTGNGT FIMEADFSTS QSDFLDVTGT
ASGNHQLLIS ASGNDPLTDN SLHVVHTAAG DSQFSLLGGS VDLGAYSYDL VQRGDNDWYL
DATTRTVSPG TQTVMALANV VPTIWYGELG VLRSRMGDVR RNPGKAGGWV RSYGNQFNVS
ATSGAAYQQQ QQGLSIGADA PLAAGDGNWL VGITAGYSNS DLNLARGSSA SVDSYHAGAY
ATWLDPESGY YIDTVARINR FRNQADVRLS DGSKAKGDYS NLGAGVSLEV GRHLNLADDW
FLEPFAQLSG LVVQGKDYSL DNGMRANSNS THSLLGKVGT SVGRTFSAGT GRSVQPYLRV
AAVHEFVNDN QVKVNDNRFS SNLAGSRAEI GAGVAVAWGE KWQAHADFDY SHGSKLEQPW
GVSVGARYNW
|
|---|
| |