Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1815 |
Symbol | pyrF |
ID | 1043286 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 2040622 |
End bp | 2041323 |
Gene Length | 702 bp |
Protein Length | 233 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637145217 |
Product | orotidine 5'-phosphate decarboxylase |
Protein accession | NP_743970 |
Protein GI | 26988545 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0284] Orotidine-5'-phosphate decarboxylase |
TIGRFAM ID | [TIGR01740] orotidine 5'-phosphate decarboxylase, subfamily 1 |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.253653 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGCCT GCCAGACGCC CCTGATCGTC GCCCTGGATT TCCCTACCCG TGAGGCCGCC CTGAAGCTGG CTGACCAGCT TGACCCTGCG CTGTGCCGGG TGAAGGTTGG CAAGGAGCTG TTCACCAGCA GCGCTTCGGG CATTGTCGAA ACCCTGTGTG ACAAGGGCTT CGAAGTGTTC CTGGACCTCA AGTTCCACGA CATTCCCAAC ACCACCGCCA TGGCGGTAAA GGCTGCCGCC GAGATGGGCG TGTGGATGGT CAACGTGCAT TGCTCCGGGG GCCTGCGCAT GATGGCGGCC TGCCGTGAAG AGCTGGCCAA GCGCAGCGGC CCGCAGCCGT TGCTGATTGG CGTGACCGTG CTGACCAGCA TGGAGCGTGA AGACCTGGCC GGCATTGGCC TGGATGTCGA CCCCCAAGAG CAAGTGCTGC GTTTGGCGGC GCTGGCGGAA AAAGCGGGTA TGGACGGTTT GGTGTGCTCG GCGCTCGAGG CCCCGGCACT GAAGGCGGCG CACCCCTCGC TGCAATTGGT GACCCCGGGC ATTCGCCCGG CGGGCAGCGC GCAGGATGAC CAGCGCCGTA TCCTCACCCC ACGCCAGGCA CTGGATGCCG GTTCGGACTA CCTGGTAATC GGCCGGCCGA TCAGCCAGGC TGCAGACCCT GCGCAAGCGT TGGCAGCGGT GGTGGCGGAG ATCCGTGGGT AA
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Protein sequence | MSACQTPLIV ALDFPTREAA LKLADQLDPA LCRVKVGKEL FTSSASGIVE TLCDKGFEVF LDLKFHDIPN TTAMAVKAAA EMGVWMVNVH CSGGLRMMAA CREELAKRSG PQPLLIGVTV LTSMEREDLA GIGLDVDPQE QVLRLAALAE KAGMDGLVCS ALEAPALKAA HPSLQLVTPG IRPAGSAQDD QRRILTPRQA LDAGSDYLVI GRPISQAADP AQALAAVVAE IRG
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