| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1723 |
|---|
| Symbol | |
|---|
| ID | 1043455 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 1923242 |
|---|
| End bp | 1924036 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637145127 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | NP_743880 |
|---|
| Protein GI | 26988455 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.807091 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0105558 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGCTG ACATCCGTTC CGGCGGCTGG TACCACCGCC TCGTGGTCTA CCTGCTGTTC
CTGATCCTGC TGCTGCCCCT GGCCGGCACC CTCCTCTACT CGCTGGCCAC CAGCTGGTCG
GCGAGCCTGC TGCCCAGTGG CCTGACCCTG AAGTGGTATG CGGCGCTGTG GAGCGAGCCG
CGCTTCCTCG CGGCCTTCGG CCAGTCGCTG CTGGTGTGCG TAGGCGCGCT GCTGCTGTCG
GTGGTGCTGA TCTTGCCACT GCTGTTCGTG GTGCATTACC ACTTCCCGCG GCTCGACGCG
CTGATGAACA TCCTCATCCT GCTGCCATTC GCGGTCCCGC CGGTGGTGTC GTCGGTGGGG
CTGCTGCAGC TGTATGGCAG CGGGCCGATG GCCATGGTCG GCACACCGTG GATCCTGATC
GGCTGCTACT TCACCATCGC CCTGCCGTTC ATGTACAGGG CCATCACCAA CAACCTGCAG
GCCATCAACC TGCGCGACCT GATGGACGCC GCGCAGCTGC TCGGCGCCAG CACCTGGCAG
GCCGCACTGC TGGTGGTGCT GCCGAACCTG CGCCAGGGCC TGATGGTGGC AGTGCTGCTG
TCGTTCTCGT TCCTGTTCGG CGAATTCGTG TTTGCCAACC TGCTGGTCGG CACCCGCTAC
GAGACCCTGC AGGTGTACCT GAACAACATG CGCAACAGCA GCGGCCACTT CAACAGCGCG
CTGGTCATCT CCTACTTCGC CTTCGTGCTG GTACTGACCT GGGTCGCCAA CCGCCTGAAC
AAGGACAAGA CCTGA
|
|---|
| Protein sequence | MRADIRSGGW YHRLVVYLLF LILLLPLAGT LLYSLATSWS ASLLPSGLTL KWYAALWSEP
RFLAAFGQSL LVCVGALLLS VVLILPLLFV VHYHFPRLDA LMNILILLPF AVPPVVSSVG
LLQLYGSGPM AMVGTPWILI GCYFTIALPF MYRAITNNLQ AINLRDLMDA AQLLGASTWQ
AALLVVLPNL RQGLMVAVLL SFSFLFGEFV FANLLVGTRY ETLQVYLNNM RNSSGHFNSA
LVISYFAFVL VLTWVANRLN KDKT
|
|---|
| |