| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1705 |
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| Symbol | nirB |
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| ID | 1043623 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 1903743 |
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| End bp | 1906295 |
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| Gene Length | 2553 bp |
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| Protein Length | 850 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637145109 |
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| Product | nitrite reductase (NAD(P)H), large subunit |
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| Protein accession | NP_743862 |
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| Protein GI | 26988437 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1251] NAD(P)H-nitrite reductase |
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| TIGRFAM ID | [TIGR02374] nitrite reductase [NAD(P)H], large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.12708 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGGCAA CAGCGAGCAG CGGGCAACGA GAGCGACTGG TCATCGTCGG CAACGGCATG
GTCGGCCACC ATTGCGTCGA ACAACTGGTC AGTCGCGGCG CCCTGCAGCG CTTCGAGGTG
CGGGTATTCG GCGAAGAGCG CCAACGCGCG TATGACCGCG TGCACCTGTC CGAATACTTC
GGCGGCAGCT GTGCCGAAAC CCTGGCCCTG TGTGAGCACG ATTTCTACGA GGCCAATGGC
GTGCACCTGC ACCTGGGTGA GGCCGTGCTG GAGATCGACC GCGAGCGCCG CGAAGTCGTC
ACTGCCGCAG GTCGCTATGG CTACGACCAA CTGGTGCTGG CCACCGGCTC CTATCCCTTC
GTGCCGCCGA TCGAAGGCTC CAGCGGCAAT GCCCGCCTGG TCTACCGCAC CCTGGACGAC
CTCGATGGCA TTCGTGCTGC CGCAGCCGGT GCCCGCCGAG GGGTGGTGGT CGGCGGCGGC
CTGCTTGGCC TGGAAGCGGC CAACGCCCTC AAGTCGCTGG GGCTGGAAGC TCACGTGGTG
GAATTCGCCC CACGGCTGAT GCCGGTACAG CTGGACGGCG AGGGCGGTGC CGCGTTGAAG
GCGCAGATCG AAGCGCTAGG TGTGGGGGTG CACCTGTCGC GCGCCACCCA GTCGGTCAGT
GCCGGTGAAA CCTACCGCTA CCGCATGAAC TTCGACGGCG GTGAGCACCT GGAAACCGAC
CTGATCGTGT TCTCCGCCGG TATCCGCCCA CAGGATGCAC TGGGCCGGGG TTGCGGCCTG
GACATCGCCG CGCGCGGTGG CGTGGTCATC GATAACCACT GCCGCAGCAG CGACCCCCGC
ATCTTCGCCA TCGGCGAGTG CGCCTCGTGG AACGGCAGCG TGTTCGGCCT GGTCGCCCCG
GGCTACAGCA TGGCGCGCAA CCTGGCCGGG CTGCTGATGG GCGAGGCGGC GGTGGCGTTC
ACCGGCGCCG ACATGTCGAC CAAGCTCAAG CTGCTGGGTG TGGATGTCGG TTCGATCGGC
GATGCCCACG GTGCCACGCC GGGCGCGCGC AGCTATCGCT TCATCGATGA AGCCAACAGC
GCTTACCGCC GTTTGGTGGT GGATGCCAGC GGCAAGCACG TGCTCGGCGC GGTGCTGGTC
GGCGACAACA GCTATTACGA CACCCTGTTG CAGTACGCCC AGAACGGCAT CGCCCTGCCG
GCCGACCCGG CAGCGCTGAT CTTGCCGCAA GGCGGTGGTG CGCCGGCCCT GGGCGCCGAT
GCGCTGCCCG ACAGCGCGAC CATCTGCTCC TGCCACAACG TCAGCAAGGG GGCGGTGTGC
GCCGCGATCG ACAGCGGCTG CAGCGACCTC GCTGCGGTCA AGGGCTGCAC CAAGGCCGCG
ACCGGCTGCG GTGGTTGCGC GGCCCTGCTC AAGCAAGTCT TCGAGCACGA ACTGACGGCC
CGCGGCGTGG CGGTGGACAA GAGCCTGTGC GAGCACTTTG CCTACACCCG GCAGGAGCTG
TACGGGTTGG TGCGGGTGGA GGGTATCCGC ACTTTCAGCG AACTGCTCGA GCGCCATGGC
AAGGGCCATC TGGGGTGTGA CATCTGCAAG CCGGCGGTGG GCAACATTCT CGCCTCGTGC
TGGAACCAGC CGATCATGGA CCCGGCGTTG GTGCCGCTGC AGGACACCAA CGACACCTTC
ATGGCCAACA TGCAGAAAAA CGGCACCTAT TCGGTGGTGC CGCGCATTCC CGGTGGTGAA
ATAACCCCCG ACAAGCTCAT CGTCATCGGC CAGGTGGCCA AGAAATACGA CCTGTACACC
AAGATCACCG GTGGCCAGCG CATCGACCTG TTCGGCGCCC AGTTGCACGA GCTGCCGCTG
ATCTGGGGCG AACTGATCGA GGCCGGTTTC GAAACCGGCC ACGCCTACGG CAAGTCGACC
CGCACGGTAA AGTCGTGCGT GGGCAGCACC TGGTGCCGTT ACGGCGTGCA GGACAGTGTC
GCCATGGCCC TGCGCCTGGA AGATCGCTAC AAGGGCCTGC GCAGCCCCCA CAAGCTCAAG
TTCGCGGTAT CGGGATGCAC CCGTGAATGC GCCGAGGCGC AGAGCAAGGA CATCGGCGTT
ATCGCCACCG ACAAGGGCTG GAACCTGTAC GTGTGCGGTA ACGGCGGCAT GCGCCCGCGG
CATGCCGAGC TGTTCGCCAC CGACCTGGAC GACGAAGCCC TGGTACGCCT GATCGACCGC
GTGCTGATGT TCTACATCCG CACGGCCGAC AAGCTGCAGC GCACCTCGGT GTGGCGCGAA
AACCTGGAAG GCGGGCTGGA CTACCTGAAG CAGGTGATCA TCGACGACAG CCTGGGCCTG
GCCAGCGAGC TGGAAAGCCA GATGCAGCAT GTGGTCGACC AGTATGAATG CGAATGGGCC
AATGCCCTCA ACGACCCGGA GAAGCTCAAG CGCTTCCGTA CCTTTGTCAA CGATCGCCGC
GCCGACCCGG ACGTGCACTT CGTGCGCGAA CGCGAACAAC GCCGGCCCGC TGCACCGCTG
CACCTGATCC CAACTGTCGA GGAGGCTGTT TGA
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| Protein sequence | MKATASSGQR ERLVIVGNGM VGHHCVEQLV SRGALQRFEV RVFGEERQRA YDRVHLSEYF
GGSCAETLAL CEHDFYEANG VHLHLGEAVL EIDRERREVV TAAGRYGYDQ LVLATGSYPF
VPPIEGSSGN ARLVYRTLDD LDGIRAAAAG ARRGVVVGGG LLGLEAANAL KSLGLEAHVV
EFAPRLMPVQ LDGEGGAALK AQIEALGVGV HLSRATQSVS AGETYRYRMN FDGGEHLETD
LIVFSAGIRP QDALGRGCGL DIAARGGVVI DNHCRSSDPR IFAIGECASW NGSVFGLVAP
GYSMARNLAG LLMGEAAVAF TGADMSTKLK LLGVDVGSIG DAHGATPGAR SYRFIDEANS
AYRRLVVDAS GKHVLGAVLV GDNSYYDTLL QYAQNGIALP ADPAALILPQ GGGAPALGAD
ALPDSATICS CHNVSKGAVC AAIDSGCSDL AAVKGCTKAA TGCGGCAALL KQVFEHELTA
RGVAVDKSLC EHFAYTRQEL YGLVRVEGIR TFSELLERHG KGHLGCDICK PAVGNILASC
WNQPIMDPAL VPLQDTNDTF MANMQKNGTY SVVPRIPGGE ITPDKLIVIG QVAKKYDLYT
KITGGQRIDL FGAQLHELPL IWGELIEAGF ETGHAYGKST RTVKSCVGST WCRYGVQDSV
AMALRLEDRY KGLRSPHKLK FAVSGCTREC AEAQSKDIGV IATDKGWNLY VCGNGGMRPR
HAELFATDLD DEALVRLIDR VLMFYIRTAD KLQRTSVWRE NLEGGLDYLK QVIIDDSLGL
ASELESQMQH VVDQYECEWA NALNDPEKLK RFRTFVNDRR ADPDVHFVRE REQRRPAAPL
HLIPTVEEAV
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