| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1688 |
|---|
| Symbol | |
|---|
| ID | 1043743 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 1880323 |
|---|
| End bp | 1881252 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637145088 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | NP_743845 |
|---|
| Protein GI | 26988420 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.648773 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCTGC TCAACGCCAT TCGCTGCTTC ATCAAGGTGG TCGAGGCCGG TAGCATCGCT
GCTGGTGCCC GTATTCTCGG CCTCAGTCCG GCAGCCGTCA GCCAGAACCT GGCGCGGCTG
GAAGGCCACC TGCAAGTACG CCTGCTCAGC CGAACCACAC GCAGCATGGC CCTGACGCCA
TCTGGCGCCC AGTATTACGA GCGTGTAAAG CATATCGAGC GTGATCTGGC CCTGGCCGAA
CAGGCAGTGA CAACACCCGA CAGCGAGCCT CAGGGGCGGC TGTGCATCGC CTCGACCTCT
GCCTTTGGGC GCCATGTGCT GGCGCCGTTG ATACCTGCTT TCAGTGCCCG CTACCCTTTA
CTTTCGATAG AGTTGGTAAC GACTGATCGT CGGGTTAACC ATGCCCGTGA AGACGTTGAC
GTGAGCCTGC GCATTGCCCC GCAGCTCGAA GACCAGCTGC TGGCCCGGCG CATCGCCCGC
ATCCCGTTCA TTTGTTGTGC CTCACCCGGT TACCTGCAGA GCGCTGGCGT ACCTGCCACG
CCCGAGGCCT TGCGCGGGCA CCGTTGCCTG GTGTTTCGCT ATCCGGTGGA TGGCCGCTTC
TTGCGCTGGG GCTTCATGCG GGACGGCCTG CGCTTCGAAG CGGAATTCGG CACTGTATTG
ATCAGCGACG ATATCGATGC CCTGACCCAG ATGGCCTTGC ACGATGGTGG CATCACCCGT
CTGGCCGAGT TCATCGTGCG GCCGCACCTG GCCTCGGGGG CCTTGGTGCC GCTGTTCGAA
TACTGCGACA GCAGCCAGGC TTACGCCCAG ACCGAGCCCA TGGACATCTA CCTGTGCCTG
GCCGATCGCT TTGCCATGAC CACCAAGGTG CGCGCTTTCA TGGACTACCT GCGCGAATGC
CTGGGCGACA GCTGGCAAGT GCAGGCATGA
|
|---|
| Protein sequence | MDLLNAIRCF IKVVEAGSIA AGARILGLSP AAVSQNLARL EGHLQVRLLS RTTRSMALTP
SGAQYYERVK HIERDLALAE QAVTTPDSEP QGRLCIASTS AFGRHVLAPL IPAFSARYPL
LSIELVTTDR RVNHAREDVD VSLRIAPQLE DQLLARRIAR IPFICCASPG YLQSAGVPAT
PEALRGHRCL VFRYPVDGRF LRWGFMRDGL RFEAEFGTVL ISDDIDALTQ MALHDGGITR
LAEFIVRPHL ASGALVPLFE YCDSSQAYAQ TEPMDIYLCL ADRFAMTTKV RAFMDYLREC
LGDSWQVQA
|
|---|
| |