| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1623 |
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| Symbol | rpoS |
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| ID | 1044853 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 1818752 |
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| End bp | 1819759 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637145023 |
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| Product | RNA polymerase sigma factor RpoS |
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| Protein accession | NP_743780 |
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| Protein GI | 26988355 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.406084 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.159546 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTCTCA GTAAAGAAGT GCCGGAGTTT GACATCGACG ATGACGTCCT CCTGATGGAG
ACGGGTATCG TTTTGGAAAC GGATGTGGTG TCAGACGAAC CTGCTGTATC TTCGGTTCGG
ACGAGGGCCA AATCGGGCTC TTCGCTCAAG CAACACAAGT ACATCGATTA CAGCAGGGCG
CTCGATGCCA CCCAGCTGTA TCTCAACGAG ATTGGTTTCT CGCCGCTGCT TTCGCCGGAA
GAAGAAGTGC ATTTTGCGCG CTTGTCGCAA AAGGGTGACC CTGCCGGCCG CAAGCGCATG
ATCGAAAGCA ACCTGCGCCT GGTTGTCAAA ATTGCCCGTC GATACGTGAA CCGTGGCCTG
TCGTTGCTCG ACCTGATCGA GGAGGGCAAC CTGGGGCTGA TCCGGGCGGT CGAGAAGTTC
GACCCGGAGC GTGGTTTCCG TTTTTCGACC TATGCGACCT GGTGGATTCG CCAGACCATC
GAACGGGCGA TCATGAACCA GACCCGCACC ATTCGCCTGC CGATCCACGT GGTCAAGGAA
CTGAACGTCT ACCTGCGCGC CGCGCGCGAG CTGACGCAGA AACTTGACCA CGAGCCCTCG
CCGGAAGAAA TCGCCACCTT GCTGGAAAAG CCGGTCGCCG AGGTCAAGCG TATGCTCGGC
CTGAACGAGC GGGTGTCTTC GGTAGACGTG TCGCTTGGCC CGGATTCGGA CAAGACCCTG
CTCGATACCC TGACCGACGA CCGCCCGACC GACCCGTGCG AACTGCTGCA GGATGACGAC
CTGTCGCAAA GCATCGATCA GTGGTTGGGT GAGTTGACCG ACAAGCAGCG TGAAGTGGTT
GTACGCCGCT TTGGCCTTCG CGGCCATGAA AGCAGTACCC TGGAGGATGT TGGGCTGGAG
ATCGGCCTTA CCCGTGAACG GGTGCGGCAA ATCCAGGTGG AAGGGCTCAA GCGCTTGCGC
GAGATCCTTG AAAAGAATGG TCTGTCCAGC GAGTCATTGT TCCAGTAG
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| Protein sequence | MALSKEVPEF DIDDDVLLME TGIVLETDVV SDEPAVSSVR TRAKSGSSLK QHKYIDYSRA
LDATQLYLNE IGFSPLLSPE EEVHFARLSQ KGDPAGRKRM IESNLRLVVK IARRYVNRGL
SLLDLIEEGN LGLIRAVEKF DPERGFRFST YATWWIRQTI ERAIMNQTRT IRLPIHVVKE
LNVYLRAARE LTQKLDHEPS PEEIATLLEK PVAEVKRMLG LNERVSSVDV SLGPDSDKTL
LDTLTDDRPT DPCELLQDDD LSQSIDQWLG ELTDKQREVV VRRFGLRGHE SSTLEDVGLE
IGLTRERVRQ IQVEGLKRLR EILEKNGLSS ESLFQ
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