Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1611 |
Symbol | kdsA-1 |
ID | 1044906 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 1807946 |
End bp | 1808791 |
Gene Length | 846 bp |
Protein Length | 281 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637145011 |
Product | 2-dehydro-3-deoxyphosphooctonate aldolase |
Protein accession | NP_743768 |
Protein GI | 26988343 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2877] 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase |
TIGRFAM ID | [TIGR01362] 3-deoxy-8-phosphooctulonate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.909852 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCAGA AGATCATTCG CGTCGGTAAC ATCGAGATCG CCAACGACAA GCCGTTCGTC CTGTTCGGCG GCATGAACGT TCTGGAATCC CGTGACCTGG CGATGAAGGT CTGCGAAGAG TACGTGCGGG TTACCGAGAA GCTCGGTATC CCGTACGTGT TCAAGGCCAG TTTCGACAAG GCCAACCGTT CGTCGGTAAC GTCCTACCGT GGCCCTGGCA TGGAAGAGGG GCTGAAGATC TTCGAAGAGA TCAAGCGCAC CTTCAACGTG CCGGTGATCA CCGATGTGCA CGAGCCTTAC CAGGCCGAGC CCGTCGCCAA GGTATGCGAC ATCATCCAGC TGCCGGCTTT CCTGTCGCGG CAGACTGACC TGGTGGTGGC CATGGCCAAA ACCGGCGTGG TGATCAACAT CAAGAAGGCT CAGTTCCTCG CACCTCAGGA AATGAAACAC ATCCTGGCCA AGTGCGAAGA GGCCGGTAAC GACCAGTTGA TACTCTGCGA ACGTGGTTCG AGCTTCGGCT ACAACAACCT GGTTGTCGAC ATGCTGGGCT TCGGCATCAT GAAGCAGTTC GAGTACCCGG TGTTCTTCGA CGTGACCCAC GCCCTGCAGA TGCCGGGTGG CCGCGCCGAT TCCGCCGGCG GTCGTCGGGC CCAGGTCACT GACCTGGCCA AGGCCGGCAT GAGTCAGGGC CTGGCCGGGC TTTTCCTCGA GGCCCACCCC GACCCGGACA ACGCCAAGTG CGATGGCCCA TGCGCCCTGC GCCTGGATAA ACTGGAGCCG TTCCTGGTCC AGCTCAAGCA ATTGGACGAC CTGGTGAAAA GTTTTCCGAC GGTAGAAACC GCGTAA
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Protein sequence | MTQKIIRVGN IEIANDKPFV LFGGMNVLES RDLAMKVCEE YVRVTEKLGI PYVFKASFDK ANRSSVTSYR GPGMEEGLKI FEEIKRTFNV PVITDVHEPY QAEPVAKVCD IIQLPAFLSR QTDLVVAMAK TGVVINIKKA QFLAPQEMKH ILAKCEEAGN DQLILCERGS SFGYNNLVVD MLGFGIMKQF EYPVFFDVTH ALQMPGGRAD SAGGRRAQVT DLAKAGMSQG LAGLFLEAHP DPDNAKCDGP CALRLDKLEP FLVQLKQLDD LVKSFPTVET A
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