Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1606 |
Symbol | dnaE |
ID | 1044930 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 1800013 |
End bp | 1803537 |
Gene Length | 3525 bp |
Protein Length | 1174 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637145006 |
Product | DNA polymerase III subunit alpha |
Protein accession | NP_743763 |
Protein GI | 26988338 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0587] DNA polymerase III, alpha subunit |
TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGGTTC CCTTCGTTCA CCTGCGCGTC CACTCCGAAT TCTCGCTGGT CGACGGCCTG GTGCGGATCA AACCGCTGGC CAAGGCGCTG ACCGGGATGA ACATGCCGGC GGTCGCGATC ACCGATCAGA GCAACATGTG CTCGCTGGTG AAGTTCTACA AGACTGCCAT GGGCGCCGGC ATCAAACCGA TCTGCGGTGC CGACCTGTGG CTGGCCGGTG CCGACCCGGA AGCCCCGCTG TCGCGCATCT GCTTCCTGGC CATGGACCCC AAGGGCTATC GCAACCTCAC CGAACTGATC TCGCGCGGCT GGACCGATGG CCAGCGCAAT GGCCTGGTCA TCCTCCAGCG TGAATGGATC GCCCCGGCCA GCGAGGGCCT GATTGCCCTG TCCGCGGGCA AGGAAGGCGA CATTGGCATG GCGCTGCTGG CGGGGCGGCA AGACGAAGCC GAAGCGCTTC TTCAAGACTG GATGGGCATG TTCCCCGAGC GCTTCTACGT TGAAGTGCAG CGCACCAATC GGGCACGCGA CGAAGAATAC GTGCACGCGG CGGTGGCATT GGCCGACAAG CTTGGCGCCC CGCTGGTGGC TACCAACGAC GTACGTTTCA TCAAGCAGGC GGACTTCGAC GCCCACGAGA CCCGCGTATG CATTGGCGAG GGATGGACCC TTGACGACCC GCGCCGTCCG CGTTGCTACA GCGACCAGCA GTACCTGAAG TCGGCCGAGG AAATGGCCGA GCTCTTCAGC GACCTGCCCG ACGCCATCGC CAACACCGTC GAGATTGCCA AGCGCTGCAA CATCCAGGTG CAACTGGGCA AGTACTTCCT GCCTGACTTC CCCACGCCCA ACGGCATGGG CATCGACGAC TACCTGCGGC ATGTGGCCCA CGAAGGCCTG GAAGAGCGCC TGGCCGTGCT GTGGCCGAAA GAGACCACGC CCAATTATGA AGAAAAGCGT CAGGTTTACC TGGACCGCCT GAAGTTCGAG CTGGACATCA TCATCCAGAT GGGCTTCCCC GGTTACTTCC TGATTGTTAT GGACTTCATC AAATGGGCCA AGAACAACGA CGTACCGGTG GGCCCGGGTC GTGGTTCGGG TGCCGGCTCG CTGGTGGCCT ATGTCCTGAA GATCACCGAT CTCGACCCGC TGGCCTACGA CCTGCTGTTC GAGCGCTTCC TCAACCCTGA ACGTGTTTCC ATGCCCGACT TCGACGTCGA CTTCTGCATG GACGGCCGTG ACCGGGTGAT CGACTACGTG GCTGAGGCCT ACGGCCGTAA CGCGGTGAGC CAGATCATCA CCTTCGGTAC CATGGCCGCC AAGGCGGTGG TGCGTGACGT GGCGCGGGTG CAAGGCAAAT CCTATGGCCT GGCCGACCGC CTGTCGAAGA TGATCCCCTT CGAAGTGGGC ATGACCCTGG AGAAGGCCTA CGAGCAGGAA GAAATCCTGC GTGACTTCCT CAAGGGCGAC GAAGACGCCC GTGAAATCTG GGACATGGCC CTGAAGCTGG AGGGTGTGAC CCGGGGTACC GGCAAGCACG CCGGTGGTGT GGTTATCGCA CCGACCAAGC TCACCGACTT TTCGCCGATC GCCTGTGATG AAGAGGGTGG TGGCCTGGTA ACCCAGTTCG ACAAGGATGA CGTCGAGGCC GCCGGCCTGG TGAAGTTCGA CTTCCTCGGC CTGCGTACCT TGACCATCAT CAAGTGGGCG ATGGAGATCA TCAACCGCGA GCAGGCCAAG AAGAACCTGC CCGACCTCAA CATCGACTTC ATCCCGCTGG ACGACCGCAA GACCTACGAG CTGCTGCAGA AGGCCGAAAC CACGGCGGTG TTCCAGCTTG AATCGCGCGG CATGAAGGAG CTGATCAAGA AGCTCAAGCC CGACTGCCTG GAAGACCTGA TCGCACTGGT TGCGTTGTTC CGCCCGGGCC CGCTGCAATC GGGCATGGTG GACGACTTCA TCAACCGCAA GCACGGCCGC GCCGAGCTGG CCTACCCGCA CTCCGACTAC CAGTACGAAG GCCTCAAGCC GGTACTGGCG CCAACCTACG GCATCATCCT GTACCAGGAA CAGGTGATGC AGATCGCCCA GGTGATGGCA GGTTATACCC TGGGTGGCGC CGACATGCTG CGCCGGGCCA TGGGTAAGAA AAAGCCCGAG GAAATGGCCA AGCAGCGCGG TGGTTTCATC GAAGGTTGCG TGGCCAACAA TATTGATGCG GACCTCGCCG GTAACATCTT CGACCTGGTA GAGAAGTTCG CGGGCTACGG CTTCAACAAA TCCCACTCCG CCGCCTATGG CCTGGTGTCG TACCAGACCG CCTGGCTGAA AACCCACTAC CCGGCGCCAT TCATGGCCGC GGTCCTGTCG GCGGATATGC ATAACACCGA CAAGGTGGTG GTGCTGGTGG AGGAGGTGCG CAGCATGAAG CTGCGCCTCG ACGCGCCGGA CGTGAACTTC TCGGACTTCA AGTTCACCGT CAACAACGAC GGCCGTATCG TCTACGGCCT TGGTGCCATC AAGGGTGTCG GCGAAGGCCC GGTGGAGGCG ATTGTCGAGG CTCGTGCCCA AGGCGGTCCC TTCAAGGACC TGTTCGATTT CTGTGAACGC ATCGACCTCA AACGGGTCAA CAAGCGTACC CTTGATGCGC TGGTGCGCAG TGGCGCGCTG GACCGCCTTG GCCCGCACTT CCATGACGAG ATCAAGGCCT ACCACGCCAA CATCGACATC AACCGGGCAA CCTTGCTGTC GGCGCTGGGC GAGGCCATCA AGGCAGCCGA GCAGGCTGCG CATACCGCTG ACAGTGGCCA TGTCGACCTG TTCGGCAGCA TGTTCGACGC GGCAGATGTC GACGTCTATG CCAACCATCG CAAGGTGCGC GAGCTCACCC TCAAGGAGCG TCTGAAGGGG GAGAAGGACA CCCTTGGCCT GTACCTCACC GGCCACCCGA TCGACGAGTA CGAGACCGAG ATCCGCCGCT TCGCACGCCA GCGCATCGTC GATCTCAAGC CGTCGCGCGA AACCCAGACC ATCGCGGGCA TGATCATTGC CCTGCGGGTG ATGAAGAACA AGAAGGGCGA CAAGATGGGC TTCGTCACCC TGGATGACCG TTCCGGGCGG ATCGAGGCAT CGCTGTTTGC CGATGCCTTC ATGGCGGCAC AGTCCTTGCT GCAGACCGAT GCGATGGTGG TGGTGGAAGG CGAGGTCAGC AATGACGACT TCTCCGGGGG CTTGCGCCTG CGGGTGAAGC AGGTGATGAC CATGGAAGAC GCGCGCACCA AGCTGGCCGA GAGCCTGCGC CTGAAGGTGG CGCACGACGC ACTGAAGGGC GACCGGCTGA AGTGGCTGGG CGAGCTGATC ACCCGCCATC GCGGTGCCTG CCCGATCACG CTGGAGTACA CCGGCAGTGA CGCCAAGGCC ATGCTGCAGT TTGGCGAGCA GTGGGCGATC GACCCGGCCG ATGGGCTGAT TCAGGCGCTG CGTGACCAGT TCGGGCGTGA GAACGTCTTC CTGCAATATC GTTGA
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Protein sequence | MSVPFVHLRV HSEFSLVDGL VRIKPLAKAL TGMNMPAVAI TDQSNMCSLV KFYKTAMGAG IKPICGADLW LAGADPEAPL SRICFLAMDP KGYRNLTELI SRGWTDGQRN GLVILQREWI APASEGLIAL SAGKEGDIGM ALLAGRQDEA EALLQDWMGM FPERFYVEVQ RTNRARDEEY VHAAVALADK LGAPLVATND VRFIKQADFD AHETRVCIGE GWTLDDPRRP RCYSDQQYLK SAEEMAELFS DLPDAIANTV EIAKRCNIQV QLGKYFLPDF PTPNGMGIDD YLRHVAHEGL EERLAVLWPK ETTPNYEEKR QVYLDRLKFE LDIIIQMGFP GYFLIVMDFI KWAKNNDVPV GPGRGSGAGS LVAYVLKITD LDPLAYDLLF ERFLNPERVS MPDFDVDFCM DGRDRVIDYV AEAYGRNAVS QIITFGTMAA KAVVRDVARV QGKSYGLADR LSKMIPFEVG MTLEKAYEQE EILRDFLKGD EDAREIWDMA LKLEGVTRGT GKHAGGVVIA PTKLTDFSPI ACDEEGGGLV TQFDKDDVEA AGLVKFDFLG LRTLTIIKWA MEIINREQAK KNLPDLNIDF IPLDDRKTYE LLQKAETTAV FQLESRGMKE LIKKLKPDCL EDLIALVALF RPGPLQSGMV DDFINRKHGR AELAYPHSDY QYEGLKPVLA PTYGIILYQE QVMQIAQVMA GYTLGGADML RRAMGKKKPE EMAKQRGGFI EGCVANNIDA DLAGNIFDLV EKFAGYGFNK SHSAAYGLVS YQTAWLKTHY PAPFMAAVLS ADMHNTDKVV VLVEEVRSMK LRLDAPDVNF SDFKFTVNND GRIVYGLGAI KGVGEGPVEA IVEARAQGGP FKDLFDFCER IDLKRVNKRT LDALVRSGAL DRLGPHFHDE IKAYHANIDI NRATLLSALG EAIKAAEQAA HTADSGHVDL FGSMFDAADV DVYANHRKVR ELTLKERLKG EKDTLGLYLT GHPIDEYETE IRRFARQRIV DLKPSRETQT IAGMIIALRV MKNKKGDKMG FVTLDDRSGR IEASLFADAF MAAQSLLQTD AMVVVEGEVS NDDFSGGLRL RVKQVMTMED ARTKLAESLR LKVAHDALKG DRLKWLGELI TRHRGACPIT LEYTGSDAKA MLQFGEQWAI DPADGLIQAL RDQFGRENVF LQYR
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