Gene PP_1529 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_1529 
SymbolcsdA 
ID1045484 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp1735314 
End bp1736519 
Gene Length1206 bp 
Protein Length401 aa 
Translation table11 
GC content67% 
IMG OID637144929 
Productcysteine sulfinate desulfinase 
Protein accessionNP_743686 
Protein GI26988261 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0520] Selenocysteine lyase 
TIGRFAM ID[TIGR01979] cysteine desulfurases, SufS subfamily 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.126316 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.13044 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCCAGC CCTCTCCCTG GCGTGCCGAC TTCCCCGCCA TCGCCGCCCT GCAACGGCAG 
CACCAGACCT ATCTGGACAG CGCCGCCACC ACCCAGAAGC CGCAAGCCTT GCTCGATGCC
CTGAGCCATT ACTACGGCCA TGGCGCGGCC AACGTGCACC GTGCCCAGCA TTTGCCCGGT
GCGCTGGCGA CCCAGGCCTT CGAAACCAGC CGCGACAAGG TCGCCGCCTG GCTCAATGCC
GCAGACTCGC GGCAGATCGT GTTCACCCAC GGCGCCACCT CGGCACTGAA CCTGCTGGCC
TATGGCCTGG AGCACCGCCT CGAAGCCGGT GACGAAATTG CCATCAGTGC CCTGGAGCAC
CATGCCAACC TGCTGCCCTG GCAACAGCTG GCGCACCGGC GCAACCTGCA CCTGGTGGTG
CTGCCACTGG ACGCCCATGG TCGTATCGAC CAGGACCAGG CACTGCAACT GATCGGCCCG
CGCACCCGAG TGCTCGCCAT CAGCCAGCTG TCCAACGTGC TGGGTACCTG GCAACCGCTG
CCAGCGCTGC TGGCCCATGC CCGCGCCCAG GGCGCGCTGA CGGTGGTCGA TGGTGCCCAG
GGCGTGGTGC ATGGTCGCCA GGACATGCAG CAACTGGGCT GCGACTTCTA TGTGTTTTCC
AGCCACAAGC TGTACGGTCC GGACGGCGTC GGCGTGCTCT ATGGCCGCGC CCAGGCCCTG
GAGCTGTTGC GCCACTGGCA GTTCGGTGGC GAGATGGTGC AGCTGGCCGA GTACCACAGC
GCCAGCTTCC GTCCCGCGCC CCTGGGCTTC GAAGCGGGTA CGCCGCCGAT TGCCGGGGTG
ATCGGTCTGG GCGCGACACT GGACTATCTG GCCAGCCTCG ATGCCCATGC GGTCGCAGCG
CATGAAGCCA GCCTGCACCA GCACCTGCTG CGTGGCCTGG GCGACCGCGA GGGCGTGCGG
GTGTTGGGCG CACCGCAGAC GGCCCTGGCC AGTTTCGTCA TCGAGGGCGT GCACAACGCC
GATATTGCTC ATTTGCTGAC TGAACAGGGC ATTGCCGTGC GTGCCGGTCA CCACTGCGCC
ATGCCACTGC TGAAGGGGCT GGGGCTGGAG GGCGCGATAC GGGTATCGCT GGGTTTGTAC
AACGACAGCG ATGACGTGCA GCGTTTCTTC GACGCGCTGG ACCAAGGCCT GGAGCTGTTG
CGATGA
 
Protein sequence
MFQPSPWRAD FPAIAALQRQ HQTYLDSAAT TQKPQALLDA LSHYYGHGAA NVHRAQHLPG 
ALATQAFETS RDKVAAWLNA ADSRQIVFTH GATSALNLLA YGLEHRLEAG DEIAISALEH
HANLLPWQQL AHRRNLHLVV LPLDAHGRID QDQALQLIGP RTRVLAISQL SNVLGTWQPL
PALLAHARAQ GALTVVDGAQ GVVHGRQDMQ QLGCDFYVFS SHKLYGPDGV GVLYGRAQAL
ELLRHWQFGG EMVQLAEYHS ASFRPAPLGF EAGTPPIAGV IGLGATLDYL ASLDAHAVAA
HEASLHQHLL RGLGDREGVR VLGAPQTALA SFVIEGVHNA DIAHLLTEQG IAVRAGHHCA
MPLLKGLGLE GAIRVSLGLY NDSDDVQRFF DALDQGLELL R