Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1529 |
Symbol | csdA |
ID | 1045484 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 1735314 |
End bp | 1736519 |
Gene Length | 1206 bp |
Protein Length | 401 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637144929 |
Product | cysteine sulfinate desulfinase |
Protein accession | NP_743686 |
Protein GI | 26988261 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0520] Selenocysteine lyase |
TIGRFAM ID | [TIGR01979] cysteine desulfurases, SufS subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.126316 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.13044 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCCAGC CCTCTCCCTG GCGTGCCGAC TTCCCCGCCA TCGCCGCCCT GCAACGGCAG CACCAGACCT ATCTGGACAG CGCCGCCACC ACCCAGAAGC CGCAAGCCTT GCTCGATGCC CTGAGCCATT ACTACGGCCA TGGCGCGGCC AACGTGCACC GTGCCCAGCA TTTGCCCGGT GCGCTGGCGA CCCAGGCCTT CGAAACCAGC CGCGACAAGG TCGCCGCCTG GCTCAATGCC GCAGACTCGC GGCAGATCGT GTTCACCCAC GGCGCCACCT CGGCACTGAA CCTGCTGGCC TATGGCCTGG AGCACCGCCT CGAAGCCGGT GACGAAATTG CCATCAGTGC CCTGGAGCAC CATGCCAACC TGCTGCCCTG GCAACAGCTG GCGCACCGGC GCAACCTGCA CCTGGTGGTG CTGCCACTGG ACGCCCATGG TCGTATCGAC CAGGACCAGG CACTGCAACT GATCGGCCCG CGCACCCGAG TGCTCGCCAT CAGCCAGCTG TCCAACGTGC TGGGTACCTG GCAACCGCTG CCAGCGCTGC TGGCCCATGC CCGCGCCCAG GGCGCGCTGA CGGTGGTCGA TGGTGCCCAG GGCGTGGTGC ATGGTCGCCA GGACATGCAG CAACTGGGCT GCGACTTCTA TGTGTTTTCC AGCCACAAGC TGTACGGTCC GGACGGCGTC GGCGTGCTCT ATGGCCGCGC CCAGGCCCTG GAGCTGTTGC GCCACTGGCA GTTCGGTGGC GAGATGGTGC AGCTGGCCGA GTACCACAGC GCCAGCTTCC GTCCCGCGCC CCTGGGCTTC GAAGCGGGTA CGCCGCCGAT TGCCGGGGTG ATCGGTCTGG GCGCGACACT GGACTATCTG GCCAGCCTCG ATGCCCATGC GGTCGCAGCG CATGAAGCCA GCCTGCACCA GCACCTGCTG CGTGGCCTGG GCGACCGCGA GGGCGTGCGG GTGTTGGGCG CACCGCAGAC GGCCCTGGCC AGTTTCGTCA TCGAGGGCGT GCACAACGCC GATATTGCTC ATTTGCTGAC TGAACAGGGC ATTGCCGTGC GTGCCGGTCA CCACTGCGCC ATGCCACTGC TGAAGGGGCT GGGGCTGGAG GGCGCGATAC GGGTATCGCT GGGTTTGTAC AACGACAGCG ATGACGTGCA GCGTTTCTTC GACGCGCTGG ACCAAGGCCT GGAGCTGTTG CGATGA
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Protein sequence | MFQPSPWRAD FPAIAALQRQ HQTYLDSAAT TQKPQALLDA LSHYYGHGAA NVHRAQHLPG ALATQAFETS RDKVAAWLNA ADSRQIVFTH GATSALNLLA YGLEHRLEAG DEIAISALEH HANLLPWQQL AHRRNLHLVV LPLDAHGRID QDQALQLIGP RTRVLAISQL SNVLGTWQPL PALLAHARAQ GALTVVDGAQ GVVHGRQDMQ QLGCDFYVFS SHKLYGPDGV GVLYGRAQAL ELLRHWQFGG EMVQLAEYHS ASFRPAPLGF EAGTPPIAGV IGLGATLDYL ASLDAHAVAA HEASLHQHLL RGLGDREGVR VLGAPQTALA SFVIEGVHNA DIAHLLTEQG IAVRAGHHCA MPLLKGLGLE GAIRVSLGLY NDSDDVQRFF DALDQGLELL R
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