| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1525 |
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| Symbol | dapE |
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| ID | 1045488 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 1729932 |
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| End bp | 1731083 |
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| Gene Length | 1152 bp |
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| Protein Length | 383 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637144925 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | NP_743682 |
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| Protein GI | 26988257 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.882269 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.131095 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGCCC CTGCCGAGCT CTCGCCTACC CTTCAACTGG CCTGCGACCT GATCCGTCGC
CCCTCGGTCA CCCCCGTCGA CGCCGATTGC CAGGCGCAGA TGATGAACCG TCTGGGCGCC
GTCGGTTTCC AGCTGGAGCC GATGCGCATT GAAGACGTCG ACAACTTCTG GGCCACCCAC
GGCAGCCAGG ACGGCCCGGT ACTGTGTTTT GCCGGCCACA CCGACGTGGT GCCTACCGGC
CCGGTCCAGC AATGGCAGCA TGAACCCTTC GAGGCACTGA TCGACGCCGA CGGCATGCTC
TGCGGCCGTG GCGCCGCCGA CATGAAGGGC AGCCTGGCAT CCATGGTCAT CGCCAGCGAG
CGCTTCGTGC AGGACTACCC GAACCACCGC GGCAAGGTCG CGTTTCTGAT CACCAGCGAC
GAGGAAGGCC CCGCCCACCA CGGCACCAAA GCGGTGGTCG AGCGCCTGAA AGCGCGCAAC
GAGCGCCTGG ACTGGTGCAT CGTCGGCGAA CCGTCCAGCA CCACCTTGCT GGGTGACGTG
GTCAAGAACG GTCGCCGCGG TTCGCTGGGC GCCAAGCTGA CCATACGCGG CAAACAGGGC
CATGTGGCCT ACCCGCACCT GGCGCGCAAC CCGATCCATC TGGCCGCCCC GGCCCTGGCG
GAACTGGCTG CCGAGCACTG GGACGAAGGC AATGCGTTCT TCCCGCCAAC CAGCTTCCAG
ATCTCCAACC TCAACTCCGG CACCGGCGCC ACCAACGTGG TCCCGGGCGA GCTGACCGCG
CTGTTCAACT TCCGCTTCTC TACCGAGTCC ACCGTCGAAG GCCTGCAGGC CCGAGTGTCG
GCGATTCTCG ACAAGCATGA ACTGGACTGG TCGGTCGACT GGGCACTGTC GGGCCTGCCG
TTCCTGACCG AACCAGGCGA GCTGCTCGAC GCCGTGGCGG CCAGCATCAA GGGCGTCACC
GGTCGCGATA CCCAGCCCTC CACCAGCGGC GGCACTTCCG ATGGCCGCTT CATCGCAACC
ATGGGCACTC AGGTGGTCGA ACTCGGCCCG GTCAACGCCA CCATCCACCA GGTTGACGAG
CGGATCCTGG CCAGCGACCT CGATCTGCTG ACCGAAATCT ACTACCAGAC CCTGGTCCGG
TTGCTCGCCT GA
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| Protein sequence | MTAPAELSPT LQLACDLIRR PSVTPVDADC QAQMMNRLGA VGFQLEPMRI EDVDNFWATH
GSQDGPVLCF AGHTDVVPTG PVQQWQHEPF EALIDADGML CGRGAADMKG SLASMVIASE
RFVQDYPNHR GKVAFLITSD EEGPAHHGTK AVVERLKARN ERLDWCIVGE PSSTTLLGDV
VKNGRRGSLG AKLTIRGKQG HVAYPHLARN PIHLAAPALA ELAAEHWDEG NAFFPPTSFQ
ISNLNSGTGA TNVVPGELTA LFNFRFSTES TVEGLQARVS AILDKHELDW SVDWALSGLP
FLTEPGELLD AVAASIKGVT GRDTQPSTSG GTSDGRFIAT MGTQVVELGP VNATIHQVDE
RILASDLDLL TEIYYQTLVR LLA
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