| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1468 |
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| Symbol | xerD |
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| ID | 1045761 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 1672953 |
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| End bp | 1673849 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637144869 |
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| Product | site-specific tyrosine recombinase XerD |
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| Protein accession | NP_743626 |
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| Protein GI | 26988201 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.208903 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGCCC TCGACCACCC CCTGATCGAC CAGTTCCTTG ACGCCCTATG GCTGGAAAAA
GGCCTGTCCG ACAACACCCG CGTGTCCTAT CGCAGCGACC TGGCCCTGTT CAATGGCTGG
TTGCAGGAGC ATTCGGTATC GCTGCCGGAC GCCGGTCGCG ACCTGATCCT CGATCACTTG
GCCTGGCGCC TGGATCAGGG CTACAAGCCA CGTTCCACGG CGCGTTTCCT CTCCGGCCTG
CGCGGCTTCT TCCGTTACCT GCTGCGGGAA AAGCTGGTGG CCATCGACCC GACCCTGCAG
GTCGACATGC CGCAATTGGG CAAGCCGCTA CCCAAGTCGC TGTCCGAAGC CGACGTCGAA
GCCCTGTTGC AGGCTCCGGA CCTGGGCGAA GCCATTGGCC AGCGCGACCG TGCCATGCTC
GAAGTGCTCT ACGCGTGCGG CCTTCGGGTT ACCGAACTGG TCAGCCTGAC CCTCGACCAG
GTCAACCTGC GCCAGGGTGT GCTGCGGGTG ATGGGCAAGG GCAGCAAGGA GCGTCTGGTG
CCCATGGGTG AAGAGGCGGT GGTGTGGTTG GAGCGCTACC AGCGCGATGG CCGCGCCGAA
CTGCTCAATG GCCGGCCCAG CGACGTGCTG TTCCCCAGTC AGCGCGGCGA GCAGATGACG
CGCCAGACCT TCTGGCACCG TATCAAACAC CACGCACGGG TTGCCGGCAT CGACAAGCCG
CTGTCGCCGC ACACCCTGCG GCATGCCTTC GCCACCCACC TGCTCAACCA CGGTGCCGAC
TTGCGGGTGG TACAGATGCT GCTGGGCCAC AGTGACCTGT CGACCACGCA GATCTATACC
CACGTCGCCA AGGCGCGCCT GCAGCAGTTG CACGCCCAGC ACCACCCGCG TGGATGA
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| Protein sequence | MPALDHPLID QFLDALWLEK GLSDNTRVSY RSDLALFNGW LQEHSVSLPD AGRDLILDHL
AWRLDQGYKP RSTARFLSGL RGFFRYLLRE KLVAIDPTLQ VDMPQLGKPL PKSLSEADVE
ALLQAPDLGE AIGQRDRAML EVLYACGLRV TELVSLTLDQ VNLRQGVLRV MGKGSKERLV
PMGEEAVVWL ERYQRDGRAE LLNGRPSDVL FPSQRGEQMT RQTFWHRIKH HARVAGIDKP
LSPHTLRHAF ATHLLNHGAD LRVVQMLLGH SDLSTTQIYT HVAKARLQQL HAQHHPRG
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