Gene PP_1463 details

Gene Information

• Locus tag: PP_1463
• Symbol: rimM
• ID: 1045770
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas putida KT2440
• Kingdom: Bacteria
• Replicon accession: NC_002947
• Strand: +
• Start bp: 1668888
• End bp: 1669424
• Gene Length: 537 bp
• Protein Length: 178 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 637144864
• Product: 16S rRNA-processing protein RimM
• Protein accession: NP_743621
• Protein GI: 26988196
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.278393
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 10
• Fosmid unclonability p-value: 0.178254
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAACGCGA CGCCAGAAAA GGCTGACGAC CTCATCGTCG TTGGCAAGAT TTTTTCGGTT 
CACGGCGTTC GCGGCGAGGT GAAGGTGTAT TCCTTTACCG ATCCGATTGA AAACCTGTTG 
GATTATCCAC GCTGGACGCT TCGGCACGAA GGCAAGGTAA AGCAGGTCGA GCTGGTCAGC 
GGTCGTGGCT CCCAAAAGGG CCTGGTCGTG AAGCTGAAAG GTCTCGACGA TCGCGATGAA 
GCCCGTCTTC TGAGCGGTTA CGAAATCTGC ATCCCGCGGA GCCTTTTGCC CAACCTGGCT 
GCCGACGAGT ACTACTGGTA CCAGTTGGTA GGTCTGAAGG TCATCAACCA GGACGAACAA 
CTGTTCGGCA AGGTCGATCA CCTGTTGGAG ACCGGTGCGA ACGATGTAAT GGTGGTCAAG 
CCCTGCGCAG GCAGCCTGGA TGATCGCGAG CGTCTGTTGC CCTATACGGA GCAATGTGTG 
CTGGCAATCG ACCTCGAAGC AGGCGTGATG CGGGTCGAAT GGGACGCGGA CTTCTAA 

 

Protein sequence

MNATPEKADD LIVVGKIFSV HGVRGEVKVY SFTDPIENLL DYPRWTLRHE GKVKQVELVS 
GRGSQKGLVV KLKGLDDRDE ARLLSGYEIC IPRSLLPNLA ADEYYWYQLV GLKVINQDEQ 
LFGKVDHLLE TGANDVMVVK PCAGSLDDRE RLLPYTEQCV LAIDLEAGVM RVEWDADF