Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1445 |
Symbol | oprB-2 |
ID | 1045819 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 1647383 |
End bp | 1648717 |
Gene Length | 1335 bp |
Protein Length | 444 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637144846 |
Product | porin B |
Protein accession | NP_743603 |
Protein GI | 26988178 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3659] Carbohydrate-selective porin |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.374886 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCCAAC TGCCTAAAAC CTGCTACATC GGCCTGGCCC TCAGTGCCTT GGCAACCCCC GCCGGCGCCA GCGAAATGTT CGCCAGCGAC TCCCCTTGGA TGCTCGGCGA CTGGGGTGGA ACCCGCAGCG AACTGCTGGA AAAGGGCTAC GACTTCACCC TTGGCTACAC CGGCGAGATG GGCAGCAACC TGCACGGCGG CTACGACCAC GACCGCACCG CGCGCTACAG CGACCAGTTC ACCTTCGGCA GCCACCTGGA CCTGGAGAAG ATCCTCGGCT GGCACGACAC CGAATTCCAG CTGACCGTCA CCGAGCGCCA CGGCGACAAC ATCAGCAACG ACCGCATCAA CGACCCGCGT GTCGGCGGCT TCACCTCCGC CCAGGAAGTC TGGGGCCGCG GCGAAACCTG GCGACTGACG CAGATGTGGA TCAAGCAGAA GTACTTCGAC GGTGCGCTGG ATGTGAAATT CGGCCGCTTT GGTGAAGGCG AGGACTTCAA CAGCTTCCCT TGCGACTTCC AGAACCTGGC TTTCTGCGGC TCGCAGGTGG GCAACTGGGT GGGTGGCATC TGGTACAACT GGCCAGTCAG CCAGTGGGCC CTGCGCGTGC GCTACAACCT TACCCCCGAG CTGTACGCCC AGGTCGGCGT CTTCGAGCAG AACCCTTCCA ACCTCGAATC CGGCAATGGT TTCAAGCTCA GCGGCAGCGG CACCCAGGGT GCGGTAATGC CGTTCGAACT GGTATGGACC CCACGTATCC AAGGCTTGAA AGGGGAATAT CGTGCCGGCT ACTACTACAG TAATGCCAAG GCACAAGATG TTCTCAAGGA CAGCAACGGT CAGCCGGCCG CCCTCAGCGG CGCCGCCTAC CGCAGCAGTT CGAGCAAGCA CGGCTTGTGG ATTGGCGCCC AGCAGCAGGT CACCTCGCTG GCGTCCGACC AGTCGCGCGG CTTGAGCGTG TTCGCCAACG CCACGGTGCA TGACAAAAAG ACCAATGCCA TCGACAACTA TGTGCAGGCA GGACTGGTAT TCAAAGGGCC TTTCGATGCC CGCGCCAAGG ACGACATCGG TTTCGCCCTG GCCCGCGTGC ACGTCAACCC TGCCTATCGC AAGAACGCCC GCCTGGTCAA CCAGGCCGCC GGCCTCTATG ACTACGACAA CCCGGGCTTC CTGCCAGTGC AGGACACCGA GTACAGCGCC GAGCTGTATT ACGGCATTCA CTTGGCCGAC TGGCTCACGG TACGCCCCAA CCTGCAGTAC ATCCGCCACC CGGGCGGGGT GTCGCAGGTC GATGGCGCCC TGATCGGCGG CCTGAAGATC CAGAGCAGTT TCTAA
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Protein sequence | MFQLPKTCYI GLALSALATP AGASEMFASD SPWMLGDWGG TRSELLEKGY DFTLGYTGEM GSNLHGGYDH DRTARYSDQF TFGSHLDLEK ILGWHDTEFQ LTVTERHGDN ISNDRINDPR VGGFTSAQEV WGRGETWRLT QMWIKQKYFD GALDVKFGRF GEGEDFNSFP CDFQNLAFCG SQVGNWVGGI WYNWPVSQWA LRVRYNLTPE LYAQVGVFEQ NPSNLESGNG FKLSGSGTQG AVMPFELVWT PRIQGLKGEY RAGYYYSNAK AQDVLKDSNG QPAALSGAAY RSSSSKHGLW IGAQQQVTSL ASDQSRGLSV FANATVHDKK TNAIDNYVQA GLVFKGPFDA RAKDDIGFAL ARVHVNPAYR KNARLVNQAA GLYDYDNPGF LPVQDTEYSA ELYYGIHLAD WLTVRPNLQY IRHPGGVSQV DGALIGGLKI QSSF
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